Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00443 ATGGAAGTGAGAAGGCAAGATAAGGAAATAGGGATTCCTACAAATTTGGGTTATGATTTACAAAAGAGGGAGTCTTCATCCAGACTGACTTCTACACCCTTTGCTCAAACTCAAACAGTGGAAGGAAAAACAAGAGATGGGACAATTCAACAAGAAGAAACCAGTTCCAGCCCACCTCAAACCCTACACCGGAATCATCCTACTTATCAGCTTCATCACCACCACCATTTTCCTCCCGGGCGCCAGTTGAATCCCCTACCACAATTTTCAGGCAATCCCGGAGAAGATCCAGACCCCAAACGGCCAGATCTAGGGTCAGCTCCGACCACACCGGTCGCTGGAAGGTTAAACTCGAAAACACCACCGCAACCTGCAGGTTCGACGGCTTTAACTATATACTCTCCAGTCCGATATCGAGAATGTTTGAAGAACCACGCGGCGAGCATGGGCGGGTACGTTCTCGATGGCTGCGGAGAATTTATGCCCACCGGAGAAGAAACCAGTATAGAAGGCTTGAAATGCGCTGCCTGCGATTGCCACCGTAACTTTCACAGGAAAGAGGTCGACGGCGGACCCTCAGCTCCTTCTTTGGCTAACTGTTACGACCCTTACAGCTCGAACAACAACACTATTCGCCGGGGCGATCAAAGATTAGCTCACCCACTTACCCACCTCAGCCATCAGAGACTCGGTCCACAGGCGCCGATGATGATGGTGTTTGGAAGTTCCGGTGGAGCGGGGGCGGAGTCTTCAAGTGAAGATCTAGCCAGAGAGTATCAAACAAAATCATCGAAGAAGCGGTTTCGGACAAAATTCACACAGGAGCAGAGAGAGAAGATGATGGAATTCGCTGAAAGATTAGGATGGAAGATTCAGAAGCATGATGAGGAAGAGGTGCAGCAATTCTGTACCGAAGCAGGTGTAAAGAGACAGGTTCTCAAGGTATGGATGCATAACAACAAGCCCGCCATTAAAAAACATCAGGTGTAA 990 48.99 MEVRRQDKEIGIPTNLGYDLQKRESSSRLTSTPFAQTQTVEGKTRDGTIQQEETSSSPPQTLHRNHPTYQLHHHHHFPPGRQLNPLPQFSGNPGEDPDPKRPDLGSAPTTPVAGRLNSKTPPQPAGSTALTIYSPVRYRECLKNHAASMGGYVLDGCGEFMPTGEETSIEGLKCAACDCHRNFHRKEVDGGPSAPSLANCYDPYSSNNNTIRRGDQRLAHPLTHLSHQRLGPQAPMMMVFGSSGGAGAESSSEDLAREYQTKSSKKRFRTKFTQEQREKMMEFAERLGWKIQKHDEEEVQQFCTEAGVKRQVLKVWMHNNKPAIKKHQV 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11967088 11968077 - Bpe006566.1 Bpe13g00443 113223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00443 329 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 138 187 IPR006456 -
Bpe13g00443 329 MobiDBLite consensus disorder prediction 19 66 - -
Bpe13g00443 329 MobiDBLite consensus disorder prediction 1 128 - -
Bpe13g00443 329 SUPERFAMILY Homeodomain-like 256 327 IPR009057 -
Bpe13g00443 329 MobiDBLite consensus disorder prediction 111 128 - -
Bpe13g00443 329 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 66 327 - -
Bpe13g00443 329 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 137 188 IPR006456 -
Bpe13g00443 329 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 265 321 IPR006455 -
Bpe13g00443 329 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 66 327 - -
Bpe13g00443 329 Pfam ZF-HD protein dimerisation region 136 188 IPR006456 -
Bpe13g00443 329 Gene3D - 249 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00443 - - - vvi:100258112 291.197
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00443 Bpe15g00427 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01693 Bpe-Chr2:19485985 Bpe13g00443 Bpe-Chr13:11967088 9.10E-64 dispersed
Bpe05g00095 Bpe-Chr5:1688161 Bpe13g00443 Bpe-Chr13:11967088 3.11E-44 dispersed
Bpe07g00043 Bpe-Chr7:377369 Bpe13g00443 Bpe-Chr13:11967088 9.20E-41 dispersed
Bpe11g01458 Bpe-Chr11:10824731 Bpe13g00443 Bpe-Chr13:11967088 8.69E-49 dispersed
Bpe13g00176 Bpe-Chr13:9670947 Bpe13g00443 Bpe-Chr13:11967088 1.10E-43 dispersed
Bpe15g00243 Bpe-Chr15:13724554 Bpe13g00443 Bpe-Chr13:11967088 1.37E-41 dispersed
Bpe06g00095 Bpe-Chr6:1408916 Bpe13g00443 Bpe-Chr13:11967088 7.36E-59 transposed
Bpe14g00312 Bpe-Chr14:3106882 Bpe13g00443 Bpe-Chr13:11967088 2.38E-34 transposed
Bpe12g00548 Bpe-Chr12:11315665 Bpe13g00443 Bpe-Chr13:11967088 8.72E-20 wgd
Bpe13g00443 Bpe-Chr13:11967088 Bpe14g00177 Bpe-Chr14:2140419 2.26E-49 wgd
Bpe13g00443 Bpe-Chr13:11967088 Bpe15g00427 Bpe-Chr15:15790946 4.94E-149 wgd
Bpe13g00443 Bpe-Chr13:11967088 Bpe07g00782 Bpe-Chr7:14268007 9.10E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22284 PF04770 ZF-HD_dimer 6.90E-30 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00443 Bpe_Chr13 FPKM 12.7414 16.314779 6.553179 7.506477 12.84152 11.754593 13.166062 6.479366 5.64363 6.624958