Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00452 ATGGTTGCTGATAAGAAGCTAAAGAATGAAGGTGCTATCGATTCCCCGACGTCGGTGCTTGAAGACGAGGATTTAGGCAACCTAGCGAATGGAGTCCAACAGGAGGGCGAGATACTGCAGGATGCAAAAAATGGGGTTTGCATTCTTATATCAAGAGAAATGAAAGAGGAGGAAGGGAACTTGCTAGAAGCTCGGATGAAGGAAGAAGAGGTTGAGCTGAAAAAGAAGTCAGATGTTACACCACATTTGGATGAAAGTCAATTTACAAAATTGGATGAGCTCTTAACTCAAACACAGTTATATACAGAGTTTCTACTGGAGAAAATGGACGACATTACATTTAACGGAGTGGAGAGGGAAACCAAACCTGTTGAGAAGAAAAAAGGCCGTGGCTCTAAAAGAAGAGCTTCTGCAAACTACAATAATAGGAAAGCCAAGAGGGCAGTTGCAGCAATGCTCACCAGATCTCAAGAAAGTGGGAAAGATGAAGATGCAAATCTTACTATCGAAGAAAGAGTTCAAAAGGAGCAGAGAGAACTGGTACCGCTGCTGACTGGTGGACACTTGAAGTCATATCAACTCAAAGGTGTAAAATGGTTGATCTCATTGTGGCAAAATGGATTAAACGGGATTCTTGCTGATCAAATGGGGCTTGGAAAGACAATTCAGACCATCGGTTTCCTTGCACATTTGAAAGGGAAAGGATTGGATGGACCTTACTTAGTGATTGCTCCTCTTTCTACTCTGTCCAATTGGGTTAATGAGATTTCAAGGTTTGTGCCATCGATAAATGCTATTATCTATCACGGTGATAAGAAACAAAGGAACGAGATACGTACAAAGTACATGCAAAGAACAATAGGCCCAAAATTCCCCATAGTAGTAACATCTTATGAGGTTGCTATGAGCGATGCAAGAAGATTTTTGAGACATTATGACTGGAAATATCTTGTTGTAGATGAGGGACACAGATTGAAAAACTCAAAGTGCAAACTTTTGAGGGAGTTGAAACTTTTATCTGCTGAAAATAAGCTTTTATTAACTGGGACGCCGCTGCAGAATAATCTAGCAGAGCTTTGGTCATTGTTGAACTTTATTTTGCCAGATATTTTCTCATCCCATGAAGAGTTTGAGTCATGGTTTGATCTCTCGGGAAAATACAGCAATGAAGAGAGGGAAGAATTGGTAGAGAAGCGAAAGAGTCAGGTAGTCATGCTATTTAACATTGTTTCTTACTTTTTATTGCATGAAAGACTGTTAACATTTCCTTTGAAATGCTTACAGGTTCTTGCAAAACTACATGCGATATTGCGTCCATTTCTACTCCGAAGAATAAAATCAGACGTGGAAAACATGCTTCCTGGAAAGAAAGAGATTATAATCTATGCCAACTTAACAGAATATCAGAAAAATTTTCAAGACCATTTAATAAATAAAAGTTTGGAAGAGCATCTCACGGAGAAGGCATCTTCTGGACATAATGTGAGAAAAAAGCTGAACAATTTGATGATCCAACTTCGGAAGAATTGCAACCATCCTGACCTTTTAGAATCTGATTTTGATAATTCTTCCACTTATCCACCTGTGGAGCAAATAGTTGAACAATGCGGTAAATTTCATTTGCTGGACAGATTGTTGTCACGCTTATTTGCTCGCAACCATAAAATCCTTATCTTCACCCAATGGTCTAAGATTTTGGACATCATGGATTACTACTTTAGTGAAAAAGGATTCGAAGTTTGTAGAATAGATGGCAGAGTGAAGCTAGATGAAAGGAGGAGACAAGTATGTGCTTGCCTTAAGAATTTTATGGCTTTTATGCTCTTTTCAGTAATGTGTCCGTTCTTTTCTTTTTTTTTTTTTCCAATGGGAAATCTCTTTGCTCCAATTCAGGATTTCAATGATGTGAACAGCAATTATAGAATTTTTCTTCTAAGCACCCGAGCTGGTGGACTGGGAATAAATCTAACAGCTGCAGATACTTGTATACTCTATGACAGTGATTGGAATCCTCAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATTGGTCAAACCAAGCCCGTTCATGTTTATAGGCTTGCAACTGCTCAATCAGTAGAGGGACGCATTCTAAAACGAGCATATAGTAAGTTGAAACTTGAGCATGTAGTAATTGGGAAAGGACAGTTTCACCAAGAACGAACCAAATCAAGCTCATATGATATTACTGAGGAAGAAGAGCTGTTGGCGCTGCTGAAGGAGGAAGAAAATGCCGAAGACAAGATGATACAAACAGACATTAGCGATGAAGATTTGGAACGGCTAATGGATCGGTCAGATCTGGCAGTTGCTTCGGCTGCTGCTACTGCTCCAAATGTGGAAGAGAAGTGCAATGGTTGGCTTCCACTGAAAGGGCCAGGTTGGGAAGTAGTGATACCAACGGCAACTGGGGGAGTGCTGTCTACACTCAACAGCTGA 2463 40.07 MVADKKLKNEGAIDSPTSVLEDEDLGNLANGVQQEGEILQDAKNGVCILISREMKEEEGNLLEARMKEEEVELKKKSDVTPHLDESQFTKLDELLTQTQLYTEFLLEKMDDITFNGVERETKPVEKKKGRGSKRRASANYNNRKAKRAVAAMLTRSQESGKDEDANLTIEERVQKEQRELVPLLTGGHLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWVNEISRFVPSINAIIYHGDKKQRNEIRTKYMQRTIGPKFPIVVTSYEVAMSDARRFLRHYDWKYLVVDEGHRLKNSKCKLLRELKLLSAENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHEEFESWFDLSGKYSNEEREELVEKRKSQVVMLFNIVSYFLLHERLLTFPLKCLQVLAKLHAILRPFLLRRIKSDVENMLPGKKEIIIYANLTEYQKNFQDHLINKSLEEHLTEKASSGHNVRKKLNNLMIQLRKNCNHPDLLESDFDNSSTYPPVEQIVEQCGKFHLLDRLLSRLFARNHKILIFTQWSKILDIMDYYFSEKGFEVCRIDGRVKLDERRRQVCACLKNFMAFMLFSVMCPFFSFFFFPMGNLFAPIQDFNDVNSNYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAYSKLKLEHVVIGKGQFHQERTKSSSYDITEEEELLALLKEEENAEDKMIQTDISDEDLERLMDRSDLAVASAAATAPNVEEKCNGWLPLKGPGWEVVIPTATGGVLSTLNS 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12033551 12038634 - Bpe006576.1 Bpe13g00452 113232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00452 820 MobiDBLite consensus disorder prediction 121 140 - -
Bpe13g00452 820 Pfam Helicase conserved C-terminal domain 541 685 IPR001650 -
Bpe13g00452 820 Coils Coil 52 74 - -
Bpe13g00452 820 Gene3D - 183 453 IPR038718 -
Bpe13g00452 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 444 IPR027417 -
Bpe13g00452 820 CDD SF2_C_SNF 527 695 - -
Bpe13g00452 820 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 3 417 - -
Bpe13g00452 820 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 428 596 - -
Bpe13g00452 820 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 630 819 - -
Bpe13g00452 820 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 369 IPR014001 -
Bpe13g00452 820 PANTHER SNF2/RAD54 HELICASE FAMILY 3 417 - -
Bpe13g00452 820 PANTHER SNF2/RAD54 HELICASE FAMILY 428 596 - -
Bpe13g00452 820 PANTHER SNF2/RAD54 HELICASE FAMILY 630 819 - -
Bpe13g00452 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 770 IPR027417 -
Bpe13g00452 820 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 541 768 IPR001650 -
Bpe13g00452 820 Gene3D - 454 596 IPR027417 -
Bpe13g00452 820 Gene3D - 626 787 IPR027417 -
Bpe13g00452 820 SMART helicmild6 567 685 IPR001650 -
Bpe13g00452 820 SMART ultradead3 185 380 IPR014001 -
Bpe13g00452 820 Pfam SNF2-related domain 192 515 IPR000330 GO:0005524|GO:0140658
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00452 K19001 HELLS, DDM1; ATP-dependent DNA helicase - csv:101214753 1127.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00452 Bpe15g00433 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00452 Bpe-Chr13:12033551 Bpe14g01173 Bpe-Chr14:8776575 7.48E-125 dispersed
Bpe13g00452 Bpe-Chr13:12033551 Bpe15g00433 Bpe-Chr15:15827515 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22287 PF00176 SNF2_N 4.70E-63 CL0023 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00452 Bpe_Chr13 FPKM 0.4773 0.48946 0.863362 1.769378 2.573773 4.497325 2.703318 0.714705 1.231771 0.56374