Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00453 ATGACCTCCTCCGTATCCATCCGCCATCTCCGCCGCCTCTCCACCATCTCCCCTGCTTCTTCTATTTCTATCTCTAAGGCCAAATCAAAACTCCGCGCCGAGTTTGATCCTGACAAAGCTTTGGATATCTACTCCTCTGTCTCCGACCACTATGCTTCCCCCGTCTCCTCTCGTTACGCTCAGGAACTCACCGTCCGCCGACTCGCCAAATCTCGCCGTTTCGCAGACATTGAGTCCCTCATTGAATCCCAAAAAAATGACCCCAAAATCACCCAGGAACCCTATCTGTCCACCTTGATTCGATCTTACGGCCGGGCAGGTATGTTCGATCACGCCGCGAGGACCTATGATCAAATGGACGACCTGGGTACTCCTAGATCAGCCATTTCCTTCAATGCTCTGTTATCAGCTGCTAACTTCTCGAAGCAATTTAATAAAGTTGCTGACTTGTTCGATGAAATTCCTCGCAAGTATACTGTTTCTCCGGACAAAATCTCGTATGGTATATTGGTGAAATCTCATTGCGAAGCTGGTTCTGTTGGTATGGCCTTGGAAATTTTGAATGAGATGGAGAAGAAAGGAGTTGAGATTACTGCGGTAACTTTTACGACAATTTTGGATTCTCTTTACAAGCAGGGGAAGACCGATGAGGCAGTGAAGCTGTGGAACGTAATGGTGAACAAGGGGTGTGAGATTGATGTAGCCGCCTATAATGTCAAGATTATGAACGAACAAGATGGGAATCCTGAAAATGTGAAGGGTTTAATTGAGGAAATGAGTAATGCTGGTCTGAAACCGGACACCATCAGTTACAATTATTTGATGACTAGTTATTGCAAGAGTGGGATGATTGATGAAGCGAAGAAGGTGTACGAAGGATTGGAAGAAAATGGTTGCAAGCCAAATGCAGCAACTTTCAGGACCTTGGTATCTTACCTGTGCAGCCATGATGATTATGAAAAGGGGTATAGAGTTTTCAAGGAGAGCGTAAAGATGCATAAAATACCTGACTTTGACACGATGAGGCGTTTGGTGGAGGGGCTGGTGGTGAATAAGCACATGAAGGAGGCCAAGGGATTGATCAGAACAATCAAGAAGAAATTTCCTCCAAATTTTTTGAATGCTTGGAAAAAAGTTGAGGACAATCTTGGTCTTGCTACTGCTGCAGATACTCCTCCAGTGGCTGATAAGAGTGAAGCGACTTAA 1206 45.19 MTSSVSIRHLRRLSTISPASSISISKAKSKLRAEFDPDKALDIYSSVSDHYASPVSSRYAQELTVRRLAKSRRFADIESLIESQKNDPKITQEPYLSTLIRSYGRAGMFDHAARTYDQMDDLGTPRSAISFNALLSAANFSKQFNKVADLFDEIPRKYTVSPDKISYGILVKSHCEAGSVGMALEILNEMEKKGVEITAVTFTTILDSLYKQGKTDEAVKLWNVMVNKGCEIDVAAYNVKIMNEQDGNPENVKGLIEEMSNAGLKPDTISYNYLMTSYCKSGMIDEAKKVYEGLEENGCKPNAATFRTLVSYLCSHDDYEKGYRVFKESVKMHKIPDFDTMRRLVEGLVVNKHMKEAKGLIRTIKKKFPPNFLNAWKKVEDNLGLATAADTPPVADKSEAT 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12046527 12047732 - Bpe006577.2 Bpe13g00453 113233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00453 401 Pfam PPR repeat 97 123 IPR002885 -
Bpe13g00453 401 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Bpe13g00453 401 Gene3D Tetratricopeptide repeat domain 241 390 IPR011990 GO:0005515
Bpe13g00453 401 Pfam PPR repeat 160 191 IPR002885 -
Bpe13g00453 401 Gene3D Tetratricopeptide repeat domain 3 142 IPR011990 GO:0005515
Bpe13g00453 401 Gene3D Tetratricopeptide repeat domain 143 240 IPR011990 GO:0005515
Bpe13g00453 401 Pfam PPR repeat family 199 239 IPR002885 -
Bpe13g00453 401 Pfam PPR repeat family 266 315 IPR002885 -
Bpe13g00453 401 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Bpe13g00453 401 TIGRFAM PPR: pentatricopeptide repeat domain 269 303 IPR002885 -
Bpe13g00453 401 TIGRFAM PPR: pentatricopeptide repeat domain 97 123 IPR002885 -
Bpe13g00453 401 TIGRFAM PPR: pentatricopeptide repeat domain 200 234 IPR002885 -
Bpe13g00453 401 TIGRFAM PPR: pentatricopeptide repeat domain 165 198 IPR002885 -
Bpe13g00453 401 PANTHER BNAA09G52830D PROTEIN 14 391 - -
Bpe13g00453 401 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 14 391 - -
Bpe13g00453 401 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Bpe13g00453 401 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00453 - - - qlo:115995360 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01058 Bpe-Chr2:12874014 Bpe13g00453 Bpe-Chr13:12046527 3.54E-70 dispersed
Bpe03g00613 Bpe-Chr3:26404156 Bpe13g00453 Bpe-Chr13:12046527 1.04E-63 dispersed
Bpe13g00453 Bpe-Chr13:12046527 Bpe14g00395 Bpe-Chr14:3696294 1.11E-08 dispersed
Bpe13g00453 Bpe-Chr13:12046527 Bpe02g01164 Bpe-Chr2:15300561 1.59E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00453 Bpe_Chr13 FPKM 38.142159 37.813316 1.645212 1.75479 2.036853 1.362334 0.924509 2.535781 2.747867 2.696738