Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00454 ATGAACTTCTGGAACGAACACAAACTGGAGTCGGAAAGGAAAGATCGGTTAGCTGTGAAACTGGGTCTTGATCCTCGACAAGTGGCTGTTTGGTTTCAGAATCGAAGAGCGCGGTGGAAGAACAAGAAACTCGAGGAAGAATACTCCCTTTTGAAGAATGCTCATGGATCTGCTCTCCTTGATAAACGCCGTCTTGAATCGGAGGTAATGAAGCTGAAAGAGCAAGTGGCAGAAGCGAAGAAGGAGATGCAAAGGCTGTGTAATGTTGTGAGTGGGAACAATGGAGGTTCAAGCAACAGTCCAAGCTCGTCGCTCTCGGTGGAAGCCCTGGAAGAAGCCGTGGCGCTAGGGGAGTTCGGGGTGGAAGGCTTTGAAGACGTCTTCTACATGCCTGTACAGAAGAACAGTTACAATCATCTCTACATTTGA 429 48.25 MNFWNEHKLESERKDRLAVKLGLDPRQVAVWFQNRRARWKNKKLEEEYSLLKNAHGSALLDKRRLESEVMKLKEQVAEAKKEMQRLCNVVSGNNGGSSNSPSSSLSVEALEEAVALGEFGVEGFEDVFYMPVQKNSYNHLYI 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12050748 12051283 - Bpe006578.1 Bpe13g00454 113234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00454 142 Pfam Homeodomain 3 41 IPR001356 GO:0003677
Bpe13g00454 142 SMART HOX_1 2 46 IPR001356 GO:0003677
Bpe13g00454 142 CDD homeodomain 7 43 IPR001356 GO:0003677
Bpe13g00454 142 PRINTS Lambda-repressor HTH signature 13 22 IPR000047 GO:0003677
Bpe13g00454 142 PRINTS Lambda-repressor HTH signature 22 38 IPR000047 GO:0003677
Bpe13g00454 142 Coils Coil 62 89 - -
Bpe13g00454 142 ProSitePatterns 'Homeobox' domain signature. 17 40 IPR017970 GO:0000981|GO:0006355
Bpe13g00454 142 Coils Coil 34 54 - -
Bpe13g00454 142 Gene3D - 2 53 - -
Bpe13g00454 142 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 2 134 - -
Bpe13g00454 142 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 134 IPR045224 GO:0003700
Bpe13g00454 142 SUPERFAMILY Homeodomain-like 3 51 IPR009057 -
Bpe13g00454 142 ProSiteProfiles 'Homeobox' domain profile. 1 42 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe10g00106 Bpe13g00454 CCT
Bpe06g00054 Bpe13g00454 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00454 Bpe-Chr13:12050748 Bpe03g01259 Bpe-Chr3:31194409 1.56E-20 dispersed
Bpe10g00106 Bpe-Chr10:1801236 Bpe13g00454 Bpe-Chr13:12050748 2.97E-40 wgd
Bpe13g00454 Bpe-Chr13:12050748 Bpe06g00054 Bpe-Chr6:648161 1.40E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22288 PF00046 Homeodomain 1.90E-12 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00454 K09338 - csin:114281220 160.614