Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00456 ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCACGTACCCGAACTCATTTTTCTCTCCCCACGACTTACTGCCAAGGCTCGCGTCTCTCTGTATAGATCCTGTCCTTTCAAAATTAGCTGGGCTAAGAACCACAGATGTGCTGTTGTTCTTTCGACTCGGATTAATGCTGTTAAAGAAGAAGGGTTTTCGGTCGAACATAGAGAACTACTTGTGAATGGTAATGGAGCTGCTACCACCACTTCTTTTGATTATCGATCCAATGGTTCGATGAATGGAACCGCTTCCGTCATTGGGACTGAAAATGGGGCGACCAATGGGATCTTAGTGAAGTACGTTAATGGAAATGGTGTTTCTGTGGCACCAGGTGGCCGGTGGAGTAGATTTAAAACCAACTCAACAATCCAGAGAACCTTGGAAATATGGGGATTTGTCCTAACTTTTATCATCAGGTCTTGGTTGAACAACAAAAAATTCACTTATCGGGGAGGAATGACAGAGGAGAAGAAAACTGTCCGACGAAAGGCCCTTGCCAAGTGGCTGAAACAGAGTATCTTAAGGCTTGATCAAGTTCCTCCTTTTCCTTCAGACACAGCAGTATCTATAGTCGAAGAAGAACTTGGAGCTCCCGTGGGTGAAGTTTTTGAACGATTTGAATATGAACCTATAGCCGCAGCCAGTCTTGGTCAAGTCCATCGTGCAAAATTGAATGGACGGGAAGTGGTTATCAAAGTACAAAGGCCAGGTCTGAAGGATCTGTTTGATACTGACCTGAAAAATCTCAGGGTAATTGCAGAATATCTTCAAAAGATTGATCCAAAGTCAGATGGTGCAAAAAGAGACTGGGTTGCTATATATGATGAGTGTGCTAATGTCTTGTATCAGGAGATCGACTACACCAAGGAAGCGGCTAATGCTGAGTTATTTGCTAATAACTTCAAAAATATGGACTATGTTAAAGTACCATCAATATATTGGGAATACACCACTCCCCAGGTTTTGACAATGGAGTATGTCCCTGGAATAAAAATAAACAAGATTGGAGCTTTAGATCAACTAGGTGTTGATCGCAAACGGTTGGGTCGATATGCTGTTGAATCTTACTTGGAGCAAATTTTATCTCATGGTTTCTTTCACGCAGACCCTCATCCTGGGAATATTGCTGTTGATGATGTTAATGGTGGTAGGTTGATCTTCTATGATTTTGGTATGATGGGAAGTATTAGTTCAAACATTAGAGAAGGATTACTTGAGGCATTTTATGGCATTTATGAGAAGGATCCAGACAAGGTCCTTCAGTCCATGATTCAAATGGGGGTTCTTGTACCTACAGGAGATATGACATCTGTCAGGCGAACAGCACAGTTCTTTCTTAACAGTTTTGAAGAACGCCTAGCTGCACAAAGAAAAGAAAGAGAGATGGCAACGGCAGAACTGGGATTTAAAAAGCCATTGACTAAGGAAGAAAAAACAATGAAAAAGAAGGAACGATTGGCAGCAATAGGGGAAGATCTTTTGGCCATTGCTGCCGACCAACCTTTTAGGTTTCCAGCCACTTTCACATTTGTTGTTAGAACATTTTCAGTTTTGGATGGCATTGGGAAAGGTCTTGATCCACGATTTGACATCACTGAGATTGCCAAACCTTATGCTTTGGAGTTGTTAAAATTTCGCGAAGCCGGTGTTGAAATCATCTTACTTATTGTTCAGGATTTTAGAACGAGATGGGACAGACAATATCGTGCTTTCTATAATTTATTTAGACAGGCAGACAGAGTTGAGAAGCTGGCAGAAATCATCCAAAGATTGGAGCAAGGGGATCTGAAGCTTAGAGTTCGAACTCTGGAATCTGAAAGAGCATTCCACCGTCTTGCAACTAGTCAGAAGACTCTTGGGAATGTCATAGCTACAGGCAGCTTGGTCAACCTTGCAACAATCTTATATATATTTGGTTTCCTGTTTCAGGTTCCTGCCGTTGGAGCTTACGCCTTGTGTGCATTTTTCGGTTTCCAAGTTCTGTTCGGCATTATAAAAGCAAAGAAATTAGATGAACAAGAAAGGCTGATAACCGGAACTGCTTAA 2085 41.63 MASSSSSSSSSLHVPELIFLSPRLTAKARVSLYRSCPFKISWAKNHRCAVVLSTRINAVKEEGFSVEHRELLVNGNGAATTTSFDYRSNGSMNGTASVIGTENGATNGILVKYVNGNGVSVAPGGRWSRFKTNSTIQRTLEIWGFVLTFIIRSWLNNKKFTYRGGMTEEKKTVRRKALAKWLKQSILRLDQVPPFPSDTAVSIVEEELGAPVGEVFERFEYEPIAAASLGQVHRAKLNGREVVIKVQRPGLKDLFDTDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANAELFANNFKNMDYVKVPSIYWEYTTPQVLTMEYVPGIKINKIGALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISSNIREGLLEAFYGIYEKDPDKVLQSMIQMGVLVPTGDMTSVRRTAQFFLNSFEERLAAQRKEREMATAELGFKKPLTKEEKTMKKKERLAAIGEDLLAIAADQPFRFPATFTFVVRTFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEIILLIVQDFRTRWDRQYRAFYNLFRQADRVEKLAEIIQRLEQGDLKLRVRTLESERAFHRLATSQKTLGNVIATGSLVNLATILYIFGFLFQVPAVGAYALCAFFGFQVLFGIIKAKKLDEQERLITGTA 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12060772 12068587 + Bpe006581.1 Bpe13g00456 113236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00456 694 Coils Coil 459 479 - -
Bpe13g00456 694 CDD ABC1_ADCK3-like 189 436 - -
Bpe13g00456 694 SUPERFAMILY Protein kinase-like (PK-like) 190 433 IPR011009 -
Bpe13g00456 694 PANTHER ABC TRANSPORTER-LIKE PROTEIN 73 189 - -
Bpe13g00456 694 Pfam ABC1 atypical kinase-like domain 190 435 IPR004147 -
Bpe13g00456 694 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 190 692 - -
Bpe13g00456 694 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 73 189 - -
Bpe13g00456 694 PANTHER ABC TRANSPORTER-LIKE PROTEIN 190 692 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00456 - - - mdm:103454713 1036.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00214 Bpe-Chr13:10199257 Bpe13g00456 Bpe-Chr13:12060772 1.39E-41 dispersed
Bpe13g00456 Bpe-Chr13:12060772 Bpe14g00739 Bpe-Chr14:5701328 3.32E-06 dispersed
Bpe13g00456 Bpe-Chr13:12060772 Bpe04g00303 Bpe-Chr4:1948290 1.13E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g877 . . . . . Bpe13g00456 . Bma15g01028 . . . Cma07g00510 . Car07g00446 . . . . . . . . . . . . . . . . . . . . Cone3ag0624 . . . . . . . . . . . . . . Cmo07g00508 . . . Car05g00768 . . Bhi10g02053 Tan05g1355 . . Hepe10g1418 . . . . . . . . . . Csa04g00525 . Cme02g00859
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005789 3 1 2 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00456 Bpe_Chr13 FPKM 27.09901 27.076164 43.018536 40.548157 20.677567 24.939188 22.333963 35.62278 38.793465 34.736214