Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00464 ATGAAAATGGCGGAATATGGATTTAAGAAAAGATTTTTTATGATTTCGGTTTTGTTACTGTTGGGAGTGGTGGCCCACGCCAATATCGGAGAGTTTGATGATTACTGGAAACATCGAGAAGAGGAAGCCAAGGCGGCGGCGCTTGACGCTTATGATCCTAACCCTGAAGCCGTCGCTGATAGCTTAAACGCTCAAGTTGGCAAAGCAATTGCAGGTACAAACAGCACAAGAAGGAACCTGAAGAAGACGAAGGGTTCATGCAGAGGGACGAACCCCATCGACAGGTGCTGGAGGTGTGACCCTAACTGGGCCAATGACAGGAAGAAGTTAGCCACCTGTGCCCTGGGCTTCGGTCACCAGACCACCGGAGGAAAAGACGGCCGATTCTACGTCGTTACCGACGCCTCCGACTCTGACCTGATTAACCCTAAACCGGGCACTCTTCGCCACGCAGTGATTCAGAAGGAACCCCTCTGGATCATCTTCTCCCGGAGCATGGTTATCCGCCTAACTCAAGAGCTGATGGTGAACAGCCACAAAACCATCGACGCAAGAGGATCCGACGTACATATCGCCTTCGGAGCCGGAATTACGGTCCAGTTTGTGAAGAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTGCCGGCACCGGCGGACTGATCAGAGATTCGGTCGACCACTATGGGTTTAGAACGAGGAGCGACGGTGATGGAATCTCAATCTTCGGATCTTCAAATATTTGGATCGACCACGTTTCTATGTCCAACTGTGAAGATGGACTGATCGACGCTATTATGGGGTCCACTGGTATAACCATCTCGAACTGTCACTTCACCCACCATAACGAGGTGATGTTGTTCGGAGCAAGCGACAGCTATTCCGGCGATGCAATAATGCAAATTACGGTAGCTTTCAACCATTTCGGAAGAGGATTGGTGCAGAGAATGCCGAGATGCAGATGGGGCTTCGTCCACGTCGTTAACAACGACTACACTCACTGGCTCATGTACGCCATTGGAGGCAGCCAACACCCCACCATTGTTAGCCAAGGCAATCGCTTCATCGCTCCTCACAACGCAGCTGCTAAAGAGGTGACGAAGAGGGATTATGCCCCGCCGGAGGTGTGGAAAAGTTGGACGTGGAGATCGGAGGGAGATCTAATGCTGAACGGAGCATTCTTCGTTAGATCAGGAGATCAAAGCAAGAGAAGGCCATATCATAGGCTGGACATGATCTCATACAAGCCCGGAACGTTCGTTTCCCGACTAACTCGCTTCTCCGGCGCACTCAAATGTCACTTCGGCAAGCCCTGTTAG 1323 51.02 MKMAEYGFKKRFFMISVLLLLGVVAHANIGEFDDYWKHREEEAKAAALDAYDPNPEAVADSLNAQVGKAIAGTNSTRRNLKKTKGSCRGTNPIDRCWRCDPNWANDRKKLATCALGFGHQTTGGKDGRFYVVTDASDSDLINPKPGTLRHAVIQKEPLWIIFSRSMVIRLTQELMVNSHKTIDARGSDVHIAFGAGITVQFVKNVIIHGLHIHDIVAGTGGLIRDSVDHYGFRTRSDGDGISIFGSSNIWIDHVSMSNCEDGLIDAIMGSTGITISNCHFTHHNEVMLFGASDSYSGDAIMQITVAFNHFGRGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYAPPEVWKSWTWRSEGDLMLNGAFFVRSGDQSKRRPYHRLDMISYKPGTFVSRLTRFSGALKCHFGKPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12165144 12166966 - Bpe010176.1 Bpe13g00464 113244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00464 440 Gene3D - 90 433 IPR012334 -
Bpe13g00464 440 SUPERFAMILY Pectin lyase-like 91 431 IPR011050 -
Bpe13g00464 440 SMART amb_all 165 362 IPR002022 -
Bpe13g00464 440 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Bpe13g00464 440 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Bpe13g00464 440 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Bpe13g00464 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Bpe13g00464 440 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Bpe13g00464 440 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Bpe13g00464 440 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Bpe13g00464 440 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Bpe13g00464 440 Pfam Pectate lyase 174 356 IPR002022 -
Bpe13g00464 440 PANTHER PECTATE LYASE 11 440 - -
Bpe13g00464 440 Pfam Pectate lyase, N terminus 28 80 IPR007524 GO:0030570
Bpe13g00464 440 PANTHER PECTATE LYASE 18-RELATED 11 440 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01467 Bpe-Chr2:17989441 Bpe13g00464 Bpe-Chr13:12165144 0 dispersed
Bpe13g00464 Bpe-Chr13:12165144 Bpe15g00661 Bpe-Chr15:17324303 3.90E-163 dispersed
Bpe13g00464 Bpe-Chr13:12165144 Bpe13g01430 Bpe-Chr13:19581657 0 wgd
Bpe13g00464 Bpe-Chr13:12165144 Bpe14g00191 Bpe-Chr14:2222322 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00464 K01728 - csv:101206497 693.345