Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00465 ATGGGACAAGCACTTGGTTGTATTCAAGTAGACCAGTCAACTGTGGCAATTAAAGAAACATTCGGGAAGTTTGATGGTGTGCTTCAACCCGGATGTAATTGCATGCCCTGGTGTTGTGGAAGCCAGTTAGCAGGTCACCTGACTTTACGTGTGCAACAACTTGATGTCCGTTGTGAAACAAAAACAAAGGATAATGTTTTTGTTACTGTGGTTGCTTCAATTCAATATCGAGCCATACCAGAGAGGGCAGAAGATGCTTTCTATAAGCTCAGCAACACGAGAGAGCAGATCCAAGCATATGTTTTTGATGGCTACTATATTGTCTTTGGTGTAGTTATTAGAGCATGCGTGCCAAAGTTAGATTTGGATTCAACTTTTGAACAGAAAAATGATATAGCTAAAGCTGTGGAAGATGAACTCGAAAAGGCTATGTCGGCTTATGGGTTTGAGATAGTTCAGACTCTGATTGTTGACATTGTGCCAGATGAGCATGTGAAGAGAGCAATGAATGAAATAAACGCCGCTGCTAGACTGAGGGTCGCAGCAACTGAGAAAGCCGAAGCAGAGAAAATATTACAAATCAAGAGAGCAGAAGGAGATGCAGAGTCCAAATATCTAGCTGGGCTTGGCATTTCCAGACAGCGTCAAGCCATCGTCGACGGGCTGAGAGACAGCGTGCTCGCCTTTTCTCACAATGTTCCTGGAACGTCGGCCAAAGACGTGATGGACATGGTTTTGGTGACCCAATATTTCGACACGATGAAGGAAATCGGTGCATCGTCGAAATCCAACTCGGTTTTCATACCGCACGGACCTGGGGCTGTGAGAGACATCGCTTCACAGATTAGAGATGGTCTTCTCCAAGCAAATGACAACGACGCCAGGTAA 888 44.93 MGQALGCIQVDQSTVAIKETFGKFDGVLQPGCNCMPWCCGSQLAGHLTLRVQQLDVRCETKTKDNVFVTVVASIQYRAIPERAEDAFYKLSNTREQIQAYVFDGYYIVFGVVIRACVPKLDLDSTFEQKNDIAKAVEDELEKAMSAYGFEIVQTLIVDIVPDEHVKRAMNEINAAARLRVAATEKAEAEKILQIKRAEGDAESKYLAGLGISRQRQAIVDGLRDSVLAFSHNVPGTSAKDVMDMVLVTQYFDTMKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQANDNDAR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12170164 12172017 - Bpe010177.1 Bpe13g00465 113245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00465 295 CDD SPFH_like_u4 10 286 - -
Bpe13g00465 295 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 1 290 - -
Bpe13g00465 295 Gene3D Band 7 domain 42 175 IPR036013 -
Bpe13g00465 295 PANTHER BNAA02G35710D PROTEIN 1 290 - -
Bpe13g00465 295 SMART PHB_4 5 173 IPR001107 -
Bpe13g00465 295 Pfam SPFH domain / Band 7 family 9 190 IPR001107 -
Bpe13g00465 295 SUPERFAMILY Band 7/SPFH domain 47 179 IPR036013 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00465 - - - csv:101206629 505.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00971 Bpe-Chr7:15479364 Bpe13g00465 Bpe-Chr13:12170164 1.78E-68 dispersed
Bpe12g00557 Bpe-Chr12:11412724 Bpe13g00465 Bpe-Chr13:12170164 1.83E-175 wgd
Bpe13g00465 Bpe-Chr13:12170164 Bpe07g00795 Bpe-Chr7:14341969 1.96E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g852 Blo01g00417 Blo16g01133 Bda01g02253 . Bpe13g00465 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0972 . . . . . . . . . . . . Bma01g00082 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000975 3 4 3 4 3 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 3 2 3 2 2 2 8 6 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00465 Bpe_Chr13 FPKM 5.568316 5.749929 7.712276 7.47301 24.18371 23.214743 24.67548 13.417798 13.416002 14.448212