Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00467 ATGGCAGTTGGCGAAGGCTGTGTTTCAGAGACGACCGTTGTATTTCAAACAGCAAATGTTGCTTCTCCTCGTAAACATCCCGATTCCTTCCGGATATCCACGTCCGCCTCTTCCTTTCAAGGCTCCAAATCCCAAGACAATATGAATCCAAGTGAGAGTGAAGAAGGGTCATTTTTTCCACCAGATGAGAAAGAAGAAAGCAACGGAGAAGATGACTATGGAAGTCTTCAACAACCGCTGAAGAAAAGAAGATTAACTCTGAATCAAGTGGAGTATCTGGAGAAAAAATTCGAGGTAGAAAATAAGCTGGAACCAGAGAGAAAAGTTGAGCTAGCCAACAGACTGGGTTTACAGCCGAGACAAGTTGCGATCTGGTTTCAGAACAGACGAGCTCGGTTGAAGACGAAGCAGCTGGAGAAAGACTACGGCGATCTCAAGTGTAGCTTTGATAAAATCATGTCTGATTATGACAATCTGCTCAAGGAAAATGATGATTTGAAAATAAAGATTAATGAGATGAAAGAAGAATTACTCGAGAGGGAGAAGAAGACGCAGAAGAATGATAGTTTAGAACAGCTCGAAGCCATGTCGTTTCCAGTTGAAGGGCATAAAAGTCCATTTTCGAATTCAGATTCTAAGCAAGTCTGTAACTTAACAATGGCGGTCGGAAAACAAGAAGAGGCAAGCTCGGATAAAAGCGACGTGTTCGATTCAGAAAGCCCATTCAACGCGGAAAACCATTCGTCTCTAATGGAGGCTGCTACTTCTTCGCAGGCGGTGTTCTCCCAAGACGAAGAAGATAACTTCACCAGAACACTTTTTCCGTCAGTTTTTCCGAATCTACAAGAAGATGAAGAGTTCCCTGAAAGTTGTAGCCATGGATTTCCAGCTGACGAGCAGGCGTTCTGTTTCTGGCCCTATTTCTCTGCAGACATTTGA 939 43.45 MAVGEGCVSETTVVFQTANVASPRKHPDSFRISTSASSFQGSKSQDNMNPSESEEGSFFPPDEKEESNGEDDYGSLQQPLKKRRLTLNQVEYLEKKFEVENKLEPERKVELANRLGLQPRQVAIWFQNRRARLKTKQLEKDYGDLKCSFDKIMSDYDNLLKENDDLKIKINEMKEELLEREKKTQKNDSLEQLEAMSFPVEGHKSPFSNSDSKQVCNLTMAVGKQEEASSDKSDVFDSESPFNAENHSSLMEAATSSQAVFSQDEEDNFTRTLFPSVFPNLQEDEEFPESCSHGFPADEQAFCFWPYFSADI 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12180833 12182194 + Bpe010179.1 Bpe13g00467 113247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00467 312 Pfam Homeobox associated leucine zipper 136 177 IPR003106 GO:0006355|GO:0043565
Bpe13g00467 312 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Bpe13g00467 312 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 11 307 - -
Bpe13g00467 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 307 IPR045224 GO:0003700
Bpe13g00467 312 SUPERFAMILY Homeodomain-like 71 138 IPR009057 -
Bpe13g00467 312 MobiDBLite consensus disorder prediction 18 80 - -
Bpe13g00467 312 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Bpe13g00467 312 SMART HOX_1 79 140 IPR001356 GO:0003677
Bpe13g00467 312 Gene3D - 39 137 - -
Bpe13g00467 312 CDD homeodomain 81 137 IPR001356 GO:0003677
Bpe13g00467 312 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Bpe13g00467 312 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Bpe13g00467 312 Coils Coil 156 193 - -
Bpe13g00467 312 MobiDBLite consensus disorder prediction 18 54 - -
Bpe13g00467 312 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00467 - - K09338 zju:107428804 272.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00488 Bpe-Chr9:13362619 Bpe13g00467 Bpe-Chr13:12180833 5.11E-42 dispersed
Bpe13g00275 Bpe-Chr13:10675184 Bpe13g00467 Bpe-Chr13:12180833 7.88E-56 dispersed
Bpe13g00467 Bpe-Chr13:12180833 Bpe15g00248 Bpe-Chr15:13788740 2.53E-34 dispersed
Bpe10g00055 Bpe-Chr10:814200 Bpe13g00467 Bpe-Chr13:12180833 1.19E-37 wgd
Bpe13g00467 Bpe-Chr13:12180833 Bpe13g01433 Bpe-Chr13:19603688 4.42E-128 wgd
Bpe13g00467 Bpe-Chr13:12180833 Bpe15g00614 Bpe-Chr15:17020322 1.74E-43 wgd
Bpe13g00467 Bpe-Chr13:12180833 Bpe06g00086 Bpe-Chr6:1208829 1.31E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017230 2 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22290 PF00046 Homeodomain 4.00E-15 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00467 Bpe_Chr13 FPKM 0.475177 0.0 0.0 0.597141 0.0 0.0 0.0 0.0 0.0 0.0