Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00471 ATGGATCCGCCTTCATTGATCAACGAAGAACCATATTCTGACCCAAATGCAGCACCATACAATCTGGCTGAGATCTGGCAGTTTCAGATGAACGGCGATGCAGTTATTTCCGAATCAGGATTAGGCGAGAGGAGGGCTCAGTTCATCCCCAATTTAGGCCAATTGGGGGAAGCTTCTGCGGTGATTCACGAACTCTCGGCCAATGCTTCGGCGAGAAAGGCACAAAATGATACGATGAAGCGACGGACTACGGAGGAGGACTCCCCCACGGGTCTCCCAGTCAGCAATGGCGCAGCAAACGATAATAAGAAACGCCATAAAACAGGAGCAAGCAGGCAGATGAATAGCGAATCAATAACTGGAGGAGAGTTGCAGAATTCCCAGACGCCTAAGCAGGACTACATTCACGTTCGAGCAAGAAGGGGCCAGGCTACAGACAGCCATAGCTTAGCTGAAAGGGCTAGAAGAGAGAAGATAAGTGAGAGAATGAAAATTCTGCAGGATTTGGTTCCAGGCTGCAACAAGGTTCTCGGAAAAGCTTTGGTGCTTGACGAGATCATCAACTACATTCAATCCTTACAGCGCCAAGTTGAGTTCTTGTCTATGAAGATTGAAGCAGTTGATTCAAGAATGAGCCATGGGATTGAAGTGTTTCCTCCTAAAGACTATGGTGAACAGACATTCGAAACCAGCAACATAGCATTTGGCTCACACGCCACGAGAGAGTTCACGCTTGGTTCGTCGCCTGAGTGGCTGCATATGCAGGTTGGCGGTGCTTTTGAAAGAACAACATAG 795 48.18 MDPPSLINEEPYSDPNAAPYNLAEIWQFQMNGDAVISESGLGERRAQFIPNLGQLGEASAVIHELSANASARKAQNDTMKRRTTEEDSPTGLPVSNGAANDNKKRHKTGASRQMNSESITGGELQNSQTPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVLGKALVLDEIINYIQSLQRQVEFLSMKIEAVDSRMSHGIEVFPPKDYGEQTFETSNIAFGSHATREFTLGSSPEWLHMQVGGAFERTT 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12200788 12202250 + Bpe010183.2 Bpe13g00471 113251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00471 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 193 IPR011598 GO:0046983
Bpe13g00471 264 Coils Coil 190 210 - -
Bpe13g00471 264 MobiDBLite consensus disorder prediction 112 129 - -
Bpe13g00471 264 Pfam Helix-loop-helix DNA-binding domain 147 194 IPR011598 GO:0046983
Bpe13g00471 264 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 264 IPR024097 GO:0006355
Bpe13g00471 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 211 IPR036638 GO:0046983
Bpe13g00471 264 SMART finulus 149 199 IPR011598 GO:0046983
Bpe13g00471 264 Gene3D - 140 215 IPR036638 GO:0046983
Bpe13g00471 264 MobiDBLite consensus disorder prediction 69 129 - -
Bpe13g00471 264 CDD bHLH_AtBPE_like 133 218 - -
Bpe13g00471 264 PANTHER BNAC05G07950D PROTEIN 1 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00471 Bpe-Chr13:12200788 Bpe10g00365 Bpe-Chr10:11243759 1.41E-46 dispersed
Bpe12g00567 Bpe-Chr12:11510494 Bpe13g00471 Bpe-Chr13:12200788 1.57E-74 wgd
Bpe13g00471 Bpe-Chr13:12200788 Bpe07g00808 Bpe-Chr7:14414093 2.16E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22291 PF00010 HLH 4.10E-09 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00471 - - csv:101209222 302.367