Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00475 ATGTCTGTTTCTAGACGGTTGTCGGTCAGTCCTCCACATTCCGATGTGGCGTCGACTCATGAATTTAAGCAGAGAGTCATAGCTTGCCTCAATAAACTCGGAGATCGCGATACTCTTGCTGTCGCTACCAGTGAGCTAGAGGCTATTGCTAAAACCTTGACGTATGATTTCTTCTCGCCTTTTCTTTCTTGTATTCATAACACTGATGCTACTTTGAAGTCGCCGGTGCGGAAACAATGTGTGAACCTATTGAGTGTTCTTTCTTACGCTCATGGCGATGCGCTATCTCCTTTCTTATCTAAGATGATTTCGATTGTTGTTCGTCGCCTCCGTGATACTGACTCTGCCGTGAGATCTGCCTGCGTCGACGCTTCGGCGGCTATGTCCTCGCAAATCACGAAGCCTTTATTTTCGTATTTTTTGAAACCGTTTATGGAAACGCTTACGCTTGAGCAGGACCTCAACTCTCAGATCGGTTCCGCGCTGTGCCTCTCTGCGGCGGTGGAGGCTGCACCGGATCCTGAGGTTATGCAGTTGAGGAAGTGCTTGCCGAGGCTTGGAAAATTGGCGAGAAGCGAGGGGTTCAAAGCTAAACCGGCGCTATTAGTTCTTATCGGAAGTATTGTTGGAGTTGGTGGCGCGTCCAGCCAGACCGTCTTGGACTGGTTGATACCTTGCCTGGTGGAGTCTTTGGGCAGTGAGGATTGGGCTGTAAGGAAAGCGGCGGCTGAGACACTTGGGAGGGTGGCTTTGGCGGAGAGAGACTTGGCGGCTGATTATAAATCATCGTGCATTAGTTCTATGGAGAGTCGGAGATTTGATAAGATAAAGGTTGTCCGGGACACTATGAATCAGACCTTGGACTCGTGGCGAGAGATTTCTAATGTTCATGAGGAAGTCTATGCAGCATCTCCACAGAAATCGCCTACGATAGATGGTGGTTGTAAAGGTGGTGGATGCTTTCCTCATGTCTCCAAAACTTGTCATGAGATCAGTTCGAAAACTCCAGCGAAGAAAAATGTGCCCACAAATAAGCTCCCGCCATTAGCTACTCCCCTTTTGACTACTGCAAAGAAAGATAGTGCTTTGAAGAGCAGTCAGTGCAACTCAAGTAAATACATGACTTGTAAGCTGGACCAAAAGAAATTTTCTGAGTCGAAATTTGAAAATGGAGAATCAAACTCGCCTTCTTCAAATGTGACTTTCGCAAAGGATATGGAAATGAGTGGCTGTGGAGATTTGGATTTTAGAGATGGTAGGGATGGTGGAAATTCCATTGTGGAAGAAAAATCTCTTCTTTTTAATCATCCCCGTGATGAAAAAGCTTATAAATTTAGGAGTTGTTCTCGTGTAGTTCCATATATAGTCAGTGAGGACCAAAACCCAGATGCTTTTGTTAGCAGCAGTACTGATGAGGCTTTTGAGAACCAGAAAGATGTTGAGGATCTCTCTTTGATTCGTGATCAACTTCTACACATCGAAAACCAGCAATCCAATCTTCTAGATCTCCTGCAGCAGAGATTTATTGGGAGCTCACAAAATGGGATGAATTCTCTAGAGACTCGAGTGCATGGACTAGAGATGGCATTGGATGAAATATCTTACGACTTGGCAGTATCAAATGGAAAGATACCAAACAGCAATGTCTCTGGAAACAAATGTTGCAAACTGCTTGGCGCAGAATTTCTTAGTTCCAAATTCTGGAAGAGAACGGAAGGGAGGTATTTTGGCTCAAGGTTTCATTCTACTGGCAACGAACAACCACCAAATTGTCTTCATCCTATGGCTGATAAAGACACTAAAATGGAACCAAATATGCCAGAAATCCGAAAGTTTCATTGTCGTAGTGGGAACAAGTTAGTCGTAAATCAATTGGCAGATGTCCAGGGCAACTCCAATGAAAATTTAGAGCGCTTTTCGATGGGAATGCAGAAGACAACACTAAAAGAAAATGAGGTTGTTAAAGGTGGAAGCGGCGTGGCCGTCACGGGGCATTACTAA 2001 44.88 MSVSRRLSVSPPHSDVASTHEFKQRVIACLNKLGDRDTLAVATSELEAIAKTLTYDFFSPFLSCIHNTDATLKSPVRKQCVNLLSVLSYAHGDALSPFLSKMISIVVRRLRDTDSAVRSACVDASAAMSSQITKPLFSYFLKPFMETLTLEQDLNSQIGSALCLSAAVEAAPDPEVMQLRKCLPRLGKLARSEGFKAKPALLVLIGSIVGVGGASSQTVLDWLIPCLVESLGSEDWAVRKAAAETLGRVALAERDLAADYKSSCISSMESRRFDKIKVVRDTMNQTLDSWREISNVHEEVYAASPQKSPTIDGGCKGGGCFPHVSKTCHEISSKTPAKKNVPTNKLPPLATPLLTTAKKDSALKSSQCNSSKYMTCKLDQKKFSESKFENGESNSPSSNVTFAKDMEMSGCGDLDFRDGRDGGNSIVEEKSLLFNHPRDEKAYKFRSCSRVVPYIVSEDQNPDAFVSSSTDEAFENQKDVEDLSLIRDQLLHIENQQSNLLDLLQQRFIGSSQNGMNSLETRVHGLEMALDEISYDLAVSNGKIPNSNVSGNKCCKLLGAEFLSSKFWKRTEGRYFGSRFHSTGNEQPPNCLHPMADKDTKMEPNMPEIRKFHCRSGNKLVVNQLADVQGNSNENLERFSMGMQKTTLKENEVVKGGSGVAVTGHY 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12224477 12227284 - Bpe010186.4 Bpe13g00475 113255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00475 666 Gene3D - 20 371 IPR011989 -
Bpe13g00475 666 ProSiteProfiles HEAT repeat profile. 223 261 IPR021133 -
Bpe13g00475 666 SUPERFAMILY ARM repeat 42 290 IPR016024 -
Bpe13g00475 666 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 7 652 IPR033337 GO:0005874|GO:0008017
Bpe13g00475 666 Pfam HEAT repeat 223 250 IPR000357 GO:0005515
Bpe13g00475 666 PANTHER TORTIFOLIA1-LIKE PROTEIN 4 7 652 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00475 - - - csv:101219826 680.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01131 Bpe-Chr8:13217011 Bpe13g00475 Bpe-Chr13:12224477 1.11E-08 dispersed
Bpe13g00475 Bpe-Chr13:12224477 Bpe13g01090 Bpe-Chr13:16445265 4.31E-57 dispersed
Bpe12g00574 Bpe-Chr12:11544513 Bpe13g00475 Bpe-Chr13:12224477 1.30E-155 wgd
Bpe13g00475 Bpe-Chr13:12224477 Bpe13g01440 Bpe-Chr13:19667519 0 wgd
Bpe13g00475 Bpe-Chr13:12224477 Bpe07g00813 Bpe-Chr7:14446403 2.56E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g803 Blo01g00409 Blo16g01141 Bda01g02242 . Bpe13g00475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00072 . . . . . . . . . Cpe07g00613 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005532 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00475 Bpe_Chr13 FPKM 23.08926 22.587883 16.519011 14.590265 36.452709 33.955303 35.657654 9.144032 9.490355 9.717601