Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00481 ATTTTTCTCCGTGCGCTGCAGTTCAATCACAGATTTGGAGACGAAGAGTTAGCCGTTTCTAGCTCAGGACATAATGCGCGGGGCGCGCTAGTTCTCGTGACTAGACCGGTTATGACGAGGGGAAGTGGTTTTCGGCTCAGAAGATTGGTTGCAAAGGCGGCTTTTGCCAATGAGGGAGGTTCTAGTCGAACTGGTACTTCTAGAAGGGTGTACAGAGAGTCGCAAACGCAGAGCTCCTCGTTTATTGCTCCAGTGAAGCAGGTTGCCTCGTTTGTTGTTCCAGCAGGCGTGTTCGTTGCTGTTACTTTCATTATGTGGAAATTGGTGGAAAAACTCCTTGCGCCAAGTCCATCGAAGACTTCTCCAATAGAAAATAAATCTTCCGAACAAGGAGTCAAGTGGTCATTTGCTGTTGGTACTAATTTGTTACCAAGTTTGACATCAAAAATCGACCGAGAATCTAAGCAAAAGCTCAATGATTTTGCCAAAGAACTCAGGACATTCAGAAGTGTTGATATGTCTGGGCGCAACTTTGGTGATGAAGGACTATTTTTCCTTGCTGAGAGTTTAGCATATAATCAGTTGAAAATTTTCAAGGTTTTTTTTTTTTTTTTTTGTTTATATGGCAAGTTATTCATGCATTCTGTCAGAAAAACAATTTTTTCTTTATTCATTCTGTGCCTGTGCAACATTTTGGTGGATAATACTGGTATTCAGAAGCTTCAACTGAACAGTACTGACTTAGGAGATGAGGGTGCAATAGCTATTGCAGAAGTATTGAAGAGAAATGCAAGCTTGCAAGTTCTTGAACTTAATAACAATTTGATTGATTATTCTGGATTTACGAGTCTTGCTGGAGCACTCCTTGAGAATACCACTTTACGCAATCTACATCTGAATGGCAATTATGGTGGTGCTTTGGGGGTCAATGCTTTGGCTAAAGGACTTGAAAACAACAAATCTTTGAGGGAGCTTCATTTACATGGAAATTCTGTTGGCGATGAAGGTGTGCGTGCTTTGGTCTCAAGTTTATCTTCACGCAAAGGGAATGCATTTTGGATTGTGTTTGGCCTAACCTTCTCTATTGGCTTACTAGGGAGACTTACACTCCTTGACGTTGGTAACAACTCAATCACTGCAAAAGGTGCCTTCTATGTTGCTGAATATATTAAGAAGACAAAGAGCTTGTTATGGCTTAACATGTATATGAATGATATTGGTGACGAGGGGGCTGAGAAGATAGCTGATGCTTTAAAGCAAAATCGAACAATAACAAATATAGACCTGGGGGGCAATAACATTCATGCCAAGGGAGTTAGTAATATTGCTCAAGCTTTAAAAGATAATTCTGTCATCACGACTTTGGACATTGCTTATAATCCAATTGGACCAGATGGAGCAAAAGATTTGTCAGACATTCTTAAATTTCACGGAAACGTACAAACCCTTAAGCTTGGTTGGTGCCAGATTGGACCAAAGGGTGCTGAGTTTATAGCTGATACATTGAAGTATAACACCACCATATCTATTTTGGACTTGCGAGCAAATGGACTCAGAGATGAAGGTGCTGCTTGTCTGGCTCGCAGCTTGAAAGTGGTTAATGAAGCTTTAACTTCCTTAGATTTAGGATTCAACGAAATAAGGGATGATGGTGCTTTTGCCATTGCTCAAGCCCTCAAGGCAAATGGAGACGTAGCAGTCTCATCTCTTAACCTTGCCAGTAACTTCCTTACAAAATTTGGACAGAGTGCTCTGACAGATGCTAGGGACCATGTCTATGAAATGAGTGAGAAGGAAGTCAACATTTTTTTCTAG 1815 40.94 IFLRALQFNHRFGDEELAVSSSGHNARGALVLVTRPVMTRGSGFRLRRLVAKAAFANEGGSSRTGTSRRVYRESQTQSSSFIAPVKQVASFVVPAGVFVAVTFIMWKLVEKLLAPSPSKTSPIENKSSEQGVKWSFAVGTNLLPSLTSKIDRESKQKLNDFAKELRTFRSVDMSGRNFGDEGLFFLAESLAYNQLKIFKVFFFFFCLYGKLFMHSVRKTIFSLFILCLCNILVDNTGIQKLQLNSTDLGDEGAIAIAEVLKRNASLQVLELNNNLIDYSGFTSLAGALLENTTLRNLHLNGNYGGALGVNALAKGLENNKSLRELHLHGNSVGDEGVRALVSSLSSRKGNAFWIVFGLTFSIGLLGRLTLLDVGNNSITAKGAFYVAEYIKKTKSLLWLNMYMNDIGDEGAEKIADALKQNRTITNIDLGGNNIHAKGVSNIAQALKDNSVITTLDIAYNPIGPDGAKDLSDILKFHGNVQTLKLGWCQIGPKGAEFIADTLKYNTTISILDLRANGLRDEGAACLARSLKVVNEALTSLDLGFNEIRDDGAFAIAQALKANGDVAVSSLNLASNFLTKFGQSALTDARDHVYEMSEKEVNIFF 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12257990 12262446 + Bpe010192.1 Bpe13g00481 113261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00481 604 PANTHER RNI-LIKE SUPERFAMILY PROTEIN 450 562 - -
Bpe13g00481 604 PANTHER RNI-LIKE SUPERFAMILY PROTEIN 517 603 - -
Bpe13g00481 604 PANTHER RNI-LIKE SUPERFAMILY PROTEIN 399 526 - -
Bpe13g00481 604 SMART LRR_RI_2 235 262 - -
Bpe13g00481 604 SMART LRR_RI_2 263 290 - -
Bpe13g00481 604 SMART LRR_RI_2 449 476 - -
Bpe13g00481 604 SMART LRR_RI_2 319 346 - -
Bpe13g00481 604 SMART LRR_RI_2 365 392 - -
Bpe13g00481 604 SMART LRR_RI_2 291 318 - -
Bpe13g00481 604 SMART LRR_RI_2 421 448 - -
Bpe13g00481 604 SMART LRR_RI_2 505 532 - -
Bpe13g00481 604 SMART LRR_RI_2 477 504 - -
Bpe13g00481 604 SMART LRR_RI_2 393 420 - -
Bpe13g00481 604 SMART LRR_RI_2 534 561 - -
Bpe13g00481 604 SMART LRR_RI_2 165 192 - -
Bpe13g00481 604 SUPERFAMILY RNI-like 150 346 - -
Bpe13g00481 604 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 399 526 - -
Bpe13g00481 604 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 450 562 - -
Bpe13g00481 604 Gene3D Ribonuclease Inhibitor 306 350 IPR032675 -
Bpe13g00481 604 Gene3D Ribonuclease Inhibitor 221 305 IPR032675 -
Bpe13g00481 604 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 517 603 - -
Bpe13g00481 604 Gene3D Ribonuclease Inhibitor 363 455 IPR032675 -
Bpe13g00481 604 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 42 400 - -
Bpe13g00481 604 SUPERFAMILY RNI-like 365 591 - -
Bpe13g00481 604 Pfam Leucine Rich repeat 480 499 IPR001611 GO:0005515
Bpe13g00481 604 Pfam Leucine Rich repeat 537 556 IPR001611 GO:0005515
Bpe13g00481 604 Pfam Leucine Rich repeat 449 471 IPR001611 GO:0005515
Bpe13g00481 604 Pfam Leucine Rich repeat 238 257 IPR001611 GO:0005515
Bpe13g00481 604 Pfam Leucine Rich repeat 399 415 IPR001611 GO:0005515
Bpe13g00481 604 Pfam Leucine Rich repeat 504 527 IPR001611 GO:0005515
Bpe13g00481 604 Pfam Leucine Rich repeat 420 443 IPR001611 GO:0005515
Bpe13g00481 604 Pfam Leucine Rich repeat 318 340 IPR001611 GO:0005515
Bpe13g00481 604 Gene3D Ribonuclease Inhibitor 456 601 IPR032675 -
Bpe13g00481 604 PANTHER RNI-LIKE SUPERFAMILY PROTEIN 42 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00481 K22614 NLRC3, NOD3; NLR family CARD domain-containing protein 3 - tcc:18609374 799.275
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00481 Bpe-Chr13:12257990 Bpe14g01174 Bpe-Chr14:8788881 8.68E-10 dispersed
Bpe13g00481 Bpe-Chr13:12257990 Bpe10g00417 Bpe-Chr10:11627262 2.79E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g769 . . . . Bpe13g00481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01684 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011878 1 3 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00481 Bpe_Chr13 FPKM 2.102786 3.64401 1.07088 0.931377 2.10494 1.46471 1.715982 0.0 0.0 0.0