Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00491 ATGGCGGCAGAGAATTGCAGCGCCGCGACTTTTCCTACCAACCCCCAGAGGGAGGAAGAAGATAATGGCGTCTCTGCTTCGATTACATCTCTGGATAACAAAGAGATTGATTCTATTTCCTCTGTCATTCCTGGGTGGTTCTCCGAGATTAGCTCCATGTGGCCAGCAGGAGAGGCGCACTCCTTGAAGATAGACAAGATTTTATTTCAAGGGAAGTCTAAGTACCAGAATGTCGTCGTCTTTCAGTCGTCAACGTATGGAAAGATTCTGGTTTTGGATGGAGTGATTCAGCTCACTGAGAGAGACGAATTTGCTTACCAAGAAATGATCGCTCACTTACCGCTTTGCTCCATTCCAAACCCGAGAAAGGTTTTGGTCATTGGCGGAGGCGATGGTGGGGTTCTTCGAGAAGTTGCTCGCCATTCTACTGTCGAGAAAATAGATATATGTGAAATTGATGAGATGGTTGTTAATGTTTCAAAACAGTTTTTCTCGGATGTAGCAGTCGGATACAACGATCCTCGGGTCAAACTTCACATCGGCGACGGTAAAATCAGCTCCTTCTCTCTTCATGAATCCCTCCCTCTTCTCGTTCCCGCCTTATGGACTCATCTTTTCCTTCATGTCGCAGGAGTTGCATTTTTTAGGGCTGTCCCAGAAGGAACTTACGATGCGATTATAGTTGATTCTTCAGATCCGATCGGCCCTGCTCAAGAGCTTTTCGAGAAGCCTTTTTTTGAGTCAGTAGCGAAGGCTTTACGTCCGGGAGGAGCCGTGTGCACTCAAGCTGAAAGTATATGGCTTCACATGCACATAATCGAGGAAATCGTGGCGAATTGTCGTCAAGTGTTCAAGGGGTCAGTCAATTATGCGTGGACTTCAGTTCCGACGTATCCGAGCGGCGTTATCGGTTTCATGCTCTGTTCGACTGAGGGGCCGGCTGTTGATTTCACGCACCCCGTTGTTCGGATAGAGGGAGTCGATACTCAGAACAACCCGAGAGGGCCCTTGAAATTTTACAATTCTGAGATTCACAAGGCAGCCTTCTGTTTGCCGTCTTTTGCCAAAAGGGTTATTGATTCAAAAGCAAAGTAG 1095 47.12 MAAENCSAATFPTNPQREEEDNGVSASITSLDNKEIDSISSVIPGWFSEISSMWPAGEAHSLKIDKILFQGKSKYQNVVVFQSSTYGKILVLDGVIQLTERDEFAYQEMIAHLPLCSIPNPRKVLVIGGGDGGVLREVARHSTVEKIDICEIDEMVVNVSKQFFSDVAVGYNDPRVKLHIGDGKISSFSLHESLPLLVPALWTHLFLHVAGVAFFRAVPEGTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGAVCTQAESIWLHMHIIEEIVANCRQVFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPAVDFTHPVVRIEGVDTQNNPRGPLKFYNSEIHKAAFCLPSFAKRVIDSKAK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12323421 12325958 - Bpe010203.2 Bpe13g00491 113271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00491 364 MobiDBLite consensus disorder prediction 7 25 - -
Bpe13g00491 364 MobiDBLite consensus disorder prediction 1 25 - -
Bpe13g00491 364 Gene3D Spermidine synthase, tetramerisation domain 38 97 IPR037163 -
Bpe13g00491 364 PANTHER SPERMIDINE SYNTHASE-RELATED 2 184 - -
Bpe13g00491 364 Pfam Spermine/spermidine synthase domain 103 183 - -
Bpe13g00491 364 Pfam Spermine/spermidine synthase domain 211 317 - -
Bpe13g00491 364 PANTHER SPERMIDINE/SPERMINE SYNTHASE 2 184 IPR001045 GO:0003824
Bpe13g00491 364 PANTHER SPERMIDINE/SPERMINE SYNTHASE 210 363 IPR001045 GO:0003824
Bpe13g00491 364 Gene3D Vaccinia Virus protein VP39 98 364 IPR029063 -
Bpe13g00491 364 CDD AdoMet_MTases 123 262 - -
Bpe13g00491 364 Pfam Spermidine synthase tetramerisation domain 45 100 IPR035246 -
Bpe13g00491 364 PANTHER SPERMIDINE SYNTHASE-RELATED 210 363 - -
Bpe13g00491 364 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 310 IPR030374 -
Bpe13g00491 364 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 124 137 IPR030373 -
Bpe13g00491 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 360 IPR029063 -
Bpe13g00491 364 Hamap Polyamine aminopropyltransferase [speE]. 45 360 IPR001045 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00491 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - zju:107428628 518.464
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00833 Bpe13g00491 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01764 Bpe-Chr11:14037235 Bpe13g00491 Bpe-Chr13:12323421 0 dispersed
Bpe13g00491 Bpe-Chr13:12323421 Bpe14g01182 Bpe-Chr14:8839825 7.39E-35 dispersed
Bpe10g00833 Bpe-Chr10:14332947 Bpe13g00491 Bpe-Chr13:12323421 0 wgd
Bpe12g00587 Bpe-Chr12:11654547 Bpe13g00491 Bpe-Chr13:12323421 1.36E-109 wgd
Bpe13g00491 Bpe-Chr13:12323421 Bpe07g00828 Bpe-Chr7:14531443 1.07E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00491 Bpe_Chr13 FPKM 6.640805 6.884798 6.463173 4.841821 9.032083 14.791012 8.079103 16.234346 14.09584 13.440766