Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00493 ATGCCAACGCTCTTCACGTCCTCCATGGCAAACCCCATTAGTTTCTGCAATCATGCAAAGAAACAACGATGTTTGCCTTCTCTAATACATGTCTTCCTTTTCCTTTCTTCTCTAAACTTCATCTTCTCTGAAGCTTCACCCGCGAAATGCAGTCTTGATTTTCAGTTTCCATTGTTCAACCGCACCGACTCCACTTCCGAGGACGAAAACTGGAGTGGGTTTCTCTCCAATCATTGTGGGGCGGCTTTTGAATCGTATTTGTACGCATTAGCCAACCGAGCCAATCGAACTGGGCAAATGTTTTTGAGTCTGGAAGAGCAGAAAGATTGCTTGATTTCACTGCAAAACATTGACTCTGATGCCTTCGATTGTGGTCTGGAGAAGCTAACCGGCGGAAATGGCGGTTGCTCTGATTATAATGTCGCAGATGTTGCAGAGAAACTAGAAAAGAGAACGAACAACTTAAGCGAAGACTGTAAATTCTCAGATTCTGAGAATTACGACAAGATTTGTAGTAAATGTTCAAAAAGGTGGATAGAGATTGTCTCTTCTTCTGATAATGGAAACGAGGTAGAAAAGAGTAAAGCCATGGTTTGTAGATTTGCAGTGCTGGTGAGATTAACGAGCAACAGGATTGACGATCAGGATTGGATTCATAATCTTTTCAAGTGCCTAGGAAATTACAGCTTTTCATCCGACGAAGAGCTAGGTTTTAATGGCATAAATGTAAACACAAGCACAGGTCTGTGGATAGTGTGTGGAGGAGTTCTGGGGATTGTGGTAGTAATTCTTATAGCAGCATGGATACTGTGGGGAAGAAAGATTGATCCAAGAACTTGTGGACAAACCAAAGTATTACATCCTTCGTCGTCTGTGAGTTCTGCCTGCATAAAGATGACTGCTCAAGAAATTCATTTGGCCACAGACAACCTCGACCCAGTAAACTTCATCGGCCAAGGAGTTGCAGGGAAAGTGTACAAGGGCAGACTTTCAAATGGTCAGCATGTTGCTGTGAAGCACATAATCAATGATGGCCAGCAAGAGACATTCATTAGAGAAGTGAAAAGCCTTGCTCACATCAGACATCCTAATTTGGTGACTCTGATTGGCTATTATGAGGGCAAAGATCAATACTTTCTAGTCTATGAACTCTGTCGACATCGAAATCTCTCCGAATGGCTATTTGGTAAAGATAAGAATCTGTCATGGATTCAACGGCTCACGATTGCGATCGACAGCGCCAGGGGTCTCCTGTTTCTCCATAACTATCATGAAGGCTGCATTGTGCATAGAGATATCAAGCCAGCCAATATTCTCATTGGAGCCAACTTTCAAGCAAAACTCTCAGACTTCGGTTTATCCAAAGTCATGAACATTGGGCAGTCTTTTGTAAGCTCAGAAGTGAGAGGGACATTTGGTTATATTGATCCAGAATATCGACAAAACCACCATGTTAAAGCTTCCGGCGACGTATATAGTTTTGGCATTGTGCTCCTGCAGCTTCTATCTGGGAAGAGAGTTATCAATCTGAACATGAAGACACCAATGCCTCTAGATAAGATGGCAAGATGCTTTACATCAGGTAATGATTCGACAGAGTTTGCTGACCCAAAACTCGACGGTGATTACCCGACAGAAGCGTTTGGCGTTGTGCTCAACCTGGCTTTGTCCTGCACGGGTCTGAAGAGGCAGCGGCCATCAATGGAGGAAGTGATGTTTAAACTGGAAATTGCTCTGAAACTCTCAAGAGAGGTGGAGTCCTTTACTTTTTCCACATCAGTAATGGCCTAA 1791 43.27 MPTLFTSSMANPISFCNHAKKQRCLPSLIHVFLFLSSLNFIFSEASPAKCSLDFQFPLFNRTDSTSEDENWSGFLSNHCGAAFESYLYALANRANRTGQMFLSLEEQKDCLISLQNIDSDAFDCGLEKLTGGNGGCSDYNVADVAEKLEKRTNNLSEDCKFSDSENYDKICSKCSKRWIEIVSSSDNGNEVEKSKAMVCRFAVLVRLTSNRIDDQDWIHNLFKCLGNYSFSSDEELGFNGINVNTSTGLWIVCGGVLGIVVVILIAAWILWGRKIDPRTCGQTKVLHPSSSVSSACIKMTAQEIHLATDNLDPVNFIGQGVAGKVYKGRLSNGQHVAVKHIINDGQQETFIREVKSLAHIRHPNLVTLIGYYEGKDQYFLVYELCRHRNLSEWLFGKDKNLSWIQRLTIAIDSARGLLFLHNYHEGCIVHRDIKPANILIGANFQAKLSDFGLSKVMNIGQSFVSSEVRGTFGYIDPEYRQNHHVKASGDVYSFGIVLLQLLSGKRVINLNMKTPMPLDKMARCFTSGNDSTEFADPKLDGDYPTEAFGVVLNLALSCTGLKRQRPSMEEVMFKLEIALKLSREVESFTFSTSVMA 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12336231 12338607 - Bpe010204.3 Bpe13g00493 113273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00493 596 Gene3D Transferase(Phosphotransferase) domain 1 386 590 - -
Bpe13g00493 596 PANTHER - 43 587 - -
Bpe13g00493 596 Pfam SPARK 45 199 IPR043891 -
Bpe13g00493 596 Pfam Protein kinase domain 315 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00493 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Bpe13g00493 596 SUPERFAMILY Protein kinase-like (PK-like) 291 576 IPR011009 -
Bpe13g00493 596 PANTHER OS01G0750732 PROTEIN 43 587 - -
Bpe13g00493 596 ProSiteProfiles Protein kinase domain profile. 311 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00493 596 Gene3D Phosphorylase Kinase; domain 1 277 384 - -
Bpe13g00493 596 SMART serkin_6 311 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00493 - - - dzi:111317667 596.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00493 Bpe-Chr13:12336231 Bpe14g00017 Bpe-Chr14:346810 4.27E-61 dispersed
Bpe13g00493 Bpe-Chr13:12336231 Bpe02g00854 Bpe-Chr2:6417085 4.76E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g733 . . . . Bpe13g00493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019506 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63665 PF00069 Pkinase 5.30E-43 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00493 Bpe_Chr13 FPKM 12.333048 11.469609 15.8643 14.559725 26.555193 28.575659 31.849516 4.679126 4.52512 5.328692