Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00495 ATGCAGCTGATGGAACTAGAAAGGAGGTTGCAGATTTTATTCACTCTGGATGATGGGCTGGTTATAGAAACTGTCATCATACCATGTGAGAGAGGCAGGACCACTGTTTGTGTTTCAAGTCAAGTGGGCTGTGCCATGAACTGTCAATTTTGCTTCACCGGCAGGATGGGCTTGACGAGACATCTTACTGCTGCTGAGATTGTAGAGCAGGCTGTCTTTGCAAGGCGATTACTCACGAGTGAAGTTGGTTCCATTACCAACGTTGTTTTCATGGGGATGGGAGAACCACTTCAGAACATTGACAATGTCATTAAAGCTGCGGACATAATGGTGCACGACCAAGGACTCTATTTCAGTCCTCGCAAAGTCACTGTTTCAACAAGTGGGCTCGTCCCCCAGCTGAAACGTTTCCTGCATGAAAGTAATTGTGCTTTAGCTGTTAGTTTGAACGCGACAACCGATGAGGTTAGAAACTGGATAATGCCAATAAATCGGAAGTATAAGTTAGGTTTACTGCTTCAGACCCTACGAGAAGAACTGCGCTTCAAACATAACTACAAAGTTCTATTTGAATATGTGATGCTTGCTGGGATAAATGACAGCACAGACGATGCAAAGAGGCTTGTCGAACTTGTTCGGGATATTCCTTGCAAGATTAATCTCATCTCCTTCAACCCACATAGTGGATCTCAATTTAGACCCACAAGTGAGGAGAAAATGATTGAATTTCGGAATCTTTTGGCAGAAGGAGGGTGTAATGTCTTCCTAAGACCGAGTAGAGGTGATGATCAAATGGCTGCTTGTGGTCAGCTCGGCAACCCTGGTACTGTCCAAGCGCCATTACTCCGTGTGCCTGAGCAATTTCGAATGGCCATGGAAGCATCTGCTTGA 891 45.12 MQLMELERRLQILFTLDDGLVIETVIIPCERGRTTVCVSSQVGCAMNCQFCFTGRMGLTRHLTAAEIVEQAVFARRLLTSEVGSITNVVFMGMGEPLQNIDNVIKAADIMVHDQGLYFSPRKVTVSTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLGLLLQTLREELRFKHNYKVLFEYVMLAGINDSTDDAKRLVELVRDIPCKINLISFNPHSGSQFRPTSEEKMIEFRNLLAEGGCNVFLRPSRGDDQMAACGQLGNPGTVQAPLLRVPEQFRMAMEASA 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12345070 12346902 - Bpe010206.2 Bpe13g00495 113275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00495 296 Pfam 4Fe-4S single cluster domain 43 146 - -
Bpe13g00495 296 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 12 272 IPR027492 GO:0030488|GO:0070475
Bpe13g00495 296 Gene3D Aldolase class I 4 277 IPR013785 -
Bpe13g00495 296 SUPERFAMILY Radical SAM enzymes 33 249 - -
Bpe13g00495 296 Pfam Radical SAM superfamily 39 203 IPR007197 GO:0003824|GO:0051536
Bpe13g00495 296 PANTHER 23S RRNA METHYLTRANSFERASE 11 275 IPR040072 -
Bpe13g00495 296 SFLD adenosine C2 methyltransferase (RlmN-like) 11 273 IPR004383 GO:0006364|GO:0008173
Bpe13g00495 296 ProSiteProfiles Radical SAM core domain profile. 30 257 IPR007197 GO:0003824|GO:0051536
Bpe13g00495 296 CDD Radical_SAM 43 243 - -
Bpe13g00495 296 SFLD methyltransferase (Class A) 11 273 - -
Bpe13g00495 296 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 11 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00495 K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] - qsu:112022590 508.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01837 Bpe-Chr4:23648923 Bpe13g00495 Bpe-Chr13:12345070 3.37E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g724 . . Bda01g02224 . Bpe13g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0658 . . . . . . . . . . . Bma01g00052 . . . . . Cma05g00005 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011256 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00495 Bpe_Chr13 FPKM 14.177969 14.664145 11.069988 10.461746 17.438856 16.686935 18.311453 8.299006 7.496054 7.726932