Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00499 ATGTTGGGAGGCAACAGTGGCAAGCACATGCTTCCTGTTTTCTTAGAAGAGAGTCAAATCCAGTTTCAGACTAATGCTTCAAATCAACTACAGTTATTTGGAAATTTACCAGTTGGATGCGATGTTGATCAAGTAAATTATTTTTGTAATGAGCAAATTAATCCCATGCTTCATCCCAACAAACGAAGCAGGGAAAATGAAGATATCCCACAGCAAAAGCTTCAGATTTCTTTAAATTATAACCTATTCCAAGATGATGCTGATCGTTTAGCAAGTATTAGGAACCCCAATCCTGTATCAACTGGATTAAGACTGTCCTATGATGACGATGAACATAACTCCTCTGTTACTTCTGCCAGTGGAAGCATTGCTGCTACAGCACCTTCGATACTTTTATCTCTTGGTAATAGTGTTATGACTGAGCTTGATAGGCAAAAAGAAGAGTTTGATAAGTACATCAAAATTCAGGAAGAACACATGGCGAAGGGGGTGAGGGACATGAAGCAAAGACACCTGGCTACTTTCCTTGCTGCGGTGGAGAAAGGTGTTAGCAAGAAACTCCAAGAAAGGGACTTGGAAATAGAAAACATCAACAGAAAGAACGGGGAATTGTGTGAGAAGATAAAGCTGGTGGCTTTGGAAGCACATAATTGGCATTATAAAGCAAAATACAATGAATCAGTTGTAAATGTCCTCAAGAGCAACCTCCAAGAGGCAATCTCACATGGAGCTGAGCAAGGAAAAGAAGGATTTGGCGACAGCGAAGGCGACGACGACGCGTCCTCACATGTTGATCCCAATAATTATCTCAGAAATCAATACGGGACTGTGAAATCTTCAGGTGGAAATAACCGGAGCACAAAGCAGCATATGATTTGCAGAGCGTGCAACTCAAAGGAGATTTCAATATTGTTGCTTCCTTGTAGACATCTATGTTTGTGTATTGGTTGTGAAGGATCAGTCCGTGTGTGTCCAGTTTGTCACTCCATGAAATCCTCTGGAATCCAAGTGTACTTTTCCTAA 1023 40.96 MLGGNSGKHMLPVFLEESQIQFQTNASNQLQLFGNLPVGCDVDQVNYFCNEQINPMLHPNKRSRENEDIPQQKLQISLNYNLFQDDADRLASIRNPNPVSTGLRLSYDDDEHNSSVTSASGSIAATAPSILLSLGNSVMTELDRQKEEFDKYIKIQEEHMAKGVRDMKQRHLATFLAAVEKGVSKKLQERDLEIENINRKNGELCEKIKLVALEAHNWHYKAKYNESVVNVLKSNLQEAISHGAEQGKEGFGDSEGDDDASSHVDPNNYLRNQYGTVKSSGGNNRSTKQHMICRACNSKEISILLLPCRHLCLCIGCEGSVRVCPVCHSMKSSGIQVYFS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12401092 12402753 - Bpe010210.1 Bpe13g00499 113279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00499 340 MobiDBLite consensus disorder prediction 246 285 - -
Bpe13g00499 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 340 IPR013083 -
Bpe13g00499 340 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 4 339 IPR017066 -
Bpe13g00499 340 PIRSF SBP1_RNase_bind 1 340 IPR017066 -
Bpe13g00499 340 ProSiteProfiles Zinc finger RING-type profile. 293 328 IPR001841 -
Bpe13g00499 340 MobiDBLite consensus disorder prediction 248 264 - -
Bpe13g00499 340 Pfam Zinc finger, C3HC4 type (RING finger) 291 329 - -
Bpe13g00499 340 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 4 339 - -
Bpe13g00499 340 MobiDBLite consensus disorder prediction 265 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00499 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - cpap:110813081 500.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00864 Bpe-Chr8:11015412 Bpe13g00499 Bpe-Chr13:12401092 2.58E-34 dispersed
Bpe12g00123 Bpe-Chr12:875738 Bpe13g00499 Bpe-Chr13:12401092 1.65E-25 dispersed
Bpe13g00499 Bpe-Chr13:12401092 Bpe15g00133 Bpe-Chr15:11395440 3.93E-26 dispersed
Bpe13g00499 Bpe-Chr13:12401092 Bpe13g01471 Bpe-Chr13:19979491 1.31E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g672 . . Bda01g02217 Bda11g01274 Bpe13g00499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01274 . . . Bma06g00614 . . . . Cma05g00020 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007540 2 1 0 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00499 Bpe_Chr13 FPKM 8.86657 8.564537 6.8213 7.719924 6.925982 7.22262 7.845063 9.566514 7.938389 9.63227