Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00500 ATGTACTGTGATTTCCGTCACCACCATTTTCAGCAGCTTCCTTGCTTGCGTTGTCATCCTCATAGCTACATCAGAATGGTGCAACATTTGATTGAGAGATGTTTACTTCTTCATTTGAGCCGTGATCAATGCATCAAGGCGTTAGCAGAACAAGCAAGTATACGGCCCCAAATAACACTTACAGTGTGGAGAGAGCTACAGAAGGAGAACAGAGAATTCTTTCATGCATATTTCCACTCCATTTATCCAAGGCATTTAACGAGTAAGAAACCCGATGATTTTCACTTATTTGACCTAATAATTAACTCTACTTTCTTAAATATTTCTCTCTTTCTCTATCTGCAGTAA 348 38.79 MYCDFRHHHFQQLPCLRCHPHSYIRMVQHLIERCLLLHLSRDQCIKALAEQASIRPQITLTVWRELQKENREFFHAYFHSIYPRHLTSKKPDDFHLFDLIINSTFLNISLFLYLQ 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12405504 12406532 + Bpe010211.1 Bpe13g00500 113280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00500 115 Pfam Plant protein 1589 of unknown function (A_thal_3526) 27 77 IPR006476 -
Bpe13g00500 115 PANTHER OS02G0137100 PROTEIN 7 92 IPR006476 -
Bpe13g00500 115 TIGRFAM A_thal_3526: uncharacterized plant-specific domain TIGR01589 24 77 IPR006476 -
Bpe13g00500 115 PANTHER - 7 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00500 - - - pop:7492391 154.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00725 Bpe-Chr4:4675712 Bpe13g00500 Bpe-Chr13:12405504 2.03E-15 dispersed
Bpe13g00500 Bpe-Chr13:12405504 Bpe14g00950 Bpe-Chr14:7048620 9.27E-14 dispersed
Bpe15g01096 Bpe-Chr15:20132379 Bpe13g00500 Bpe-Chr13:12405504 5.94E-10 dispersed
Bpe13g00500 Bpe-Chr13:12405504 Bpe02g00824 Bpe-Chr2:6058752 7.15E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g670 . . Bda01g02216 . Bpe13g00500 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma05g00021 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013217 1 2 0 1 1 1 1 0 0 1 1 2 2 1 1 1 1 0 2 1 1 0 0 0 1 0 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00500 Bpe_Chr13 FPKM 2.19697 1.877217 4.625294 3.120115 4.284375 0.0 3.343653 0.0 0.943571 0.0