Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00512 ATGTTCAACTTCGGCGATTCAAATTCAGATACAGGTGGTAGAACTGCTCTGGATTATCAGCTTCCTTCTCCTTATGGAATCACTTTCCCTGGCAAACCTTATGGAAGACTGTCTGATGGGAAAGTAATGGTCGATGTTTTTGGTATGACTGACTCTCTCTCACCGGAGCTTTTTCTAAGTTTTTGTTTGCTTCTCACTTCTTGGTGGACGTGTGAAGCTGAGAAATTAGGGTTGCCATACTTGAGCGCGTACTTGGATTCCATGGCAGCAAACTTTGGAGGAGGAGCGAACTTCGCGACGGCAGGATCGACGATTCAGCCATTGGATGGAACAAGTTTTGAGGCGAAATTCAGCCCAATCTCGCTCGACGTTCAACTTTTTCAGTTTATGAGACTCAAAGCACATGCGGACGAGGTTTATAGCCAAGGAAAACTAAAATCCGCCATGAAAGACAAGCTTCCTAGACCGGAGGAGTTCTCCAAGGCGTTGTACACATTTGACATCGGACAGAATGATTTATTTGCTGGACTGATGAAGATGACTCCCCAACAACTGACTGAAACCCTTCCCAATATCACCTTGCGCTTATCCATGGCAGTAGAAAAACTATATGAAGAAGGAGCAAGGTTTTTTTGGATACACAACACGGGTCCTATTGGATGCTTGCCTTACGCGCTTCTTTATTCTCCTCCAAGCTCGAGTATTGCAGACAACAATGGCTGCCTGGAATCTCTCAACGAGTTGGCTTGGGAATTCAACCTGCAGATCAAAACGAGGGTGGTCCAGCTTAGAACCCAGCTCTCAGATGCAGTCCTCATTTACGTAGATCTGTATGCAGCCAAATACGCACTCATTAGCAACGCAGAAAAATTCGGAAATTTGATTCGTTTTGCAGGTTTTAAGGATCCTCTTGGGTACTGCTGTGGAAGTGATAAGGTTCAGTGTGGAAATAAAGAGGAAGAGGGTTTGAAAGCAGTGTGTAGGAATTCTTCAGAGTACATCAGCTGGGATGGAGCTCATTATTCAGAGGCAGCAAACAAATGGGTAGCTGACAGAATAGCAGATGGCTCATTCTCTGACCCTCACATTTCATTGGATAAATTATGCCGCCATGGACAAGAGCCTTAG 1128 45.04 MFNFGDSNSDTGGRTALDYQLPSPYGITFPGKPYGRLSDGKVMVDVFGMTDSLSPELFLSFCLLLTSWWTCEAEKLGLPYLSAYLDSMAANFGGGANFATAGSTIQPLDGTSFEAKFSPISLDVQLFQFMRLKAHADEVYSQGKLKSAMKDKLPRPEEFSKALYTFDIGQNDLFAGLMKMTPQQLTETLPNITLRLSMAVEKLYEEGARFFWIHNTGPIGCLPYALLYSPPSSSIADNNGCLESLNELAWEFNLQIKTRVVQLRTQLSDAVLIYVDLYAAKYALISNAEKFGNLIRFAGFKDPLGYCCGSDKVQCGNKEEEGLKAVCRNSSEYISWDGAHYSEAANKWVADRIADGSFSDPHISLDKLCRHGQEP 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12475184 12476604 - Bpe010221.3 Bpe13g00512 113292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00512 375 CDD SGNH_plant_lipase_like 1 357 IPR035669 -
Bpe13g00512 375 Gene3D SGNH hydrolase 1 357 IPR036514 -
Bpe13g00512 375 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 73 371 - -
Bpe13g00512 375 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 1 47 - -
Bpe13g00512 375 SUPERFAMILY SGNH hydrolase 161 355 - -
Bpe13g00512 375 Pfam GDSL-like Lipase/Acylhydrolase 2 353 IPR001087 GO:0016788
Bpe13g00512 375 PANTHER 2, PUTATIVE-RELATED 1 47 - -
Bpe13g00512 375 PANTHER 2, PUTATIVE-RELATED 73 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00512 - - - mdm:103452378 375.555
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00512 Bpe-Chr13:12475184 Bpe13g00968 Bpe-Chr13:15513300 2.95E-68 dispersed
Bpe13g00512 Bpe-Chr13:12475184 Bpe11g01363 Bpe-Chr11:10203492 1.55E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g631 . . . . Bpe13g00512 . . . . Cmo18g00763 . . . . . . . . . . . . . . . . . . . . . Cone13ag1083 Cone19ag1071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024613 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00512 Bpe_Chr13 FPKM 6.50541 6.259371 2.131027 1.522462 0.929979 0.0 0.919715 1.68516 1.646365 1.540904