Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00513 ATGCAGGAGGCTCTCTCTGCGTCTGGGCTGAGCTCCGAGAAGCTTAGCCTACCTACTCTCCAGTCCAGGATGAAGTGTGACCCGGAAGGATATGAATCAGAACTTGTTCTTCTTTACAGCCAATTCAAATCCTCTGTGGATCTCTGCCAACTACAAGCTGCTCAGAACTTCACATCCTTCGGTGGCGTTAGTAGCGATCCTACTGTTGCCAAAAGCCTTGGAGAAAGGGCTATGTTCTTAGCCCATGTAACTCCTTTCTATCATCACCATCTCTCCGAGTTCCCCAAGCAACTCGCTGAATTGCTCCGCTCTTCCGCAAGATCACTGCCTTCGGCTCTGCGCTGTCACTTAGCGCAGTCTCTTGTTCTTCTGATTAACAGACAGATGGTAGACATTGGAGAAAATTTGGCACTGTTCATGGAGCTGCAGACATTGGGTGATCGAGAATTAAGGAAGTTGGCATTCTCTCACATTATTCATAGCATCAAAAGAATGAATCAAAAGCACAAGAATGAAGCAAAAAATCGAATGCTTCAAAATATATTGTTTACCATGCTACAGAAAGAGGATGAAGCATTAGCCAAGCGATCCCTGGTAACATTATGTGAGCTACATCGGAGGAAGCTGTGGTTTGATGATCGAACTGCAAATGCAATTTGTACTTCTTGTTTTCATCCATCGACTAGGATCATGATTGCTACTCTGTCATTTCTTCTTGATTATGAGAAAATCGTAGATGCTGATGATGATGATAGTGATGCATCGAGTAGTGAAGATGACTCAACTCCTCTAGTACCTCATGCAGTGCTTAGTAGAGAAGCTGTTTATAAGGCGCACCACAAAGGTACAGTTTCTAGCAAAAGGAAAAAGAAAGCGAAATTGCAACGTGTCATTCGTAGCATGAAAAAAAAGCAACGTCTGTCATCAGAGAGAAACACATCAGATCATTATTCACCACTTAACCATCTGAAGGATGCACAGGGATTTTCCGAGAAACTATTCTCTCGACTTCAGACCTGCAATGAACGGTTTGAGGTAAATACATTTCTCCTAGGATTTTCAGCTATGTGTACAGCAAACCAGTTTTTAGTTGGTTCTAACTATTTGTTACATTTTCCTCACTTCCTATTTCCTCATCAACGTGATGTCACAAGCTTACTTGCTGCAGCCGTTCAAACTTGCCATGATATGGTCCCTCCCGATGCAGTAGAGCCTCTTTTCAAACAAATTGTAAATCAATTTGTGCACGATCATTCTCGTCCAGAGGCAATTGCTGTTGGGATTAATGTAATAAGGGAGATTTGTTTGCGTATGCCTCTGCTCATGACAGAAGATTTACTTCAAGATCTTGCTTTGTACAAGAAATCACATGAGAAGGCAGTTTCAGTGGCTGCACGATCTCTTATTGGTCTCTTCAGAGAGGTTTGTCCATCACTTTTGGTGAAGAAAGACCGAGGACGGCCTACTAACCCAACAGCAAGGCCAAAAGCATATGGGGAAGTCAGTGTAGTCAGCGATGTTCCGGGTGTTGAATTGTTACAAGATGACAGTGACAAGACAGATGAAGATGATTCTGGATCTGGTAGCGAGGAAAATGCCAGCGGAGATGAATGCACCCTACATGACAATTATCAAAGTGAAGATGATAAATCAGAGGAACACAATGCTATAGCTCAAGACAGAGATGGAAATTATAGTACTGACGGCACTGATGACAATGAATATGATGGTGAGTTTGATGATGATAATGATGATGAAGAAGATGTGAGTGAGGATGAAGCAAAGGAAGTTGAAGAGAGCTATAATGATAACGGTGAAGAGGATTTTGAAACTGATGAAATGGCAAATGAGAATGGTTACAGGGAGAGCATAACTGAAATAAAAGATTCTAAAGTGAGGAAGAGGAAGTTCCCTGATTTTAGGAAACAAATTATTGCTGCCGATTCAAGTCTTCAGGCTCTAAAAGGGTTGACTAGAAGAATGCTTAAGCGACCCTCATCAGACGAAGGAGATGGTATTCTTTCTAATGAAGACTTCCGAAAGATAAAGGATCGAAAGGCAAAGGAAGAAGCAAAAATTGCCATGACTCAGCATGGTTTGCTTAGAAAAGGTTCAGATGCAAAGGCAACAACTTTTAAGATTCCAAGTTCTGATCGACTGAGTAGTAAGCGTGTAGATCCTTCCCAACTAGAAGTTCATGTTCGGAAGAAGCTAACAAAGGACGAAAGATTGGCATTAGTGAGAGCAGGTAGAGAAGAGAGAGGGAAGTACCAGGCTCGAGCTGCCATAAAACAGAAGAAGACTGGAGGTATGAGCAACAGGCAGAAAGAGCACAAAAAGGCAATGCCACTTGCAGCAAAGAGGTCGAAAATCTCAAAATTGCGGGTCCAGAAGCAGAAAAGAGAGCAGCGATCAGGCAAACACTTCCAGGGAAAGAAAGCCTGGAAATAG 2451 42.47 MQEALSASGLSSEKLSLPTLQSRMKCDPEGYESELVLLYSQFKSSVDLCQLQAAQNFTSFGGVSSDPTVAKSLGERAMFLAHVTPFYHHHLSEFPKQLAELLRSSARSLPSALRCHLAQSLVLLINRQMVDIGENLALFMELQTLGDRELRKLAFSHIIHSIKRMNQKHKNEAKNRMLQNILFTMLQKEDEALAKRSLVTLCELHRRKLWFDDRTANAICTSCFHPSTRIMIATLSFLLDYEKIVDADDDDSDASSSEDDSTPLVPHAVLSREAVYKAHHKGTVSSKRKKKAKLQRVIRSMKKKQRLSSERNTSDHYSPLNHLKDAQGFSEKLFSRLQTCNERFEVNTFLLGFSAMCTANQFLVGSNYLLHFPHFLFPHQRDVTSLLAAAVQTCHDMVPPDAVEPLFKQIVNQFVHDHSRPEAIAVGINVIREICLRMPLLMTEDLLQDLALYKKSHEKAVSVAARSLIGLFREVCPSLLVKKDRGRPTNPTARPKAYGEVSVVSDVPGVELLQDDSDKTDEDDSGSGSEENASGDECTLHDNYQSEDDKSEEHNAIAQDRDGNYSTDGTDDNEYDGEFDDDNDDEEDVSEDEAKEVEESYNDNGEEDFETDEMANENGYRESITEIKDSKVRKRKFPDFRKQIIAADSSLQALKGLTRRMLKRPSSDEGDGILSNEDFRKIKDRKAKEEAKIAMTQHGLLRKGSDAKATTFKIPSSDRLSSKRVDPSQLEVHVRKKLTKDERLALVRAGREERGKYQARAAIKQKKTGGMSNRQKEHKKAMPLAAKRSKISKLRVQKQKREQRSGKHFQGKKAWK 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12484004 12489229 + Bpe010222.2 Bpe13g00513 113293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00513 816 PANTHER PROTEIN SDA1 HOMOLOG 13 816 - -
Bpe13g00513 816 MobiDBLite consensus disorder prediction 698 728 - -
Bpe13g00513 816 MobiDBLite consensus disorder prediction 535 559 - -
Bpe13g00513 816 MobiDBLite consensus disorder prediction 279 321 - -
Bpe13g00513 816 MobiDBLite consensus disorder prediction 281 302 - -
Bpe13g00513 816 MobiDBLite consensus disorder prediction 569 613 - -
Bpe13g00513 816 PANTHER HSDA/SDA1-RELATED 13 816 IPR027312 GO:0000055|GO:0042273
Bpe13g00513 816 MobiDBLite consensus disorder prediction 751 816 - -
Bpe13g00513 816 SUPERFAMILY ARM repeat 78 480 IPR016024 -
Bpe13g00513 816 Pfam NUC130/3NT domain 79 130 IPR012977 -
Bpe13g00513 816 MobiDBLite consensus disorder prediction 483 622 - -
Bpe13g00513 816 MobiDBLite consensus disorder prediction 785 816 - -
Bpe13g00513 816 Pfam SDA1 442 813 IPR007949 -
Bpe13g00513 816 MobiDBLite consensus disorder prediction 516 530 - -
Bpe13g00513 816 MobiDBLite consensus disorder prediction 770 784 - -
Bpe13g00513 816 Coils Coil 284 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00513 K14856 SDA1, SDAD1; protein SDA1 - zju:107428499 1033.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g596 Blo01g00379 . Bda01g02201 . Bpe13g00513 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0708 Cone12ag0686 . . . . . . . . . . Bma01g00031 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007839 1 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00513 Bpe_Chr13 FPKM 10.663185 10.506558 6.681021 8.009426 7.083636 6.715669 6.815388 6.777038 7.390476 6.280787