Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00516 ACGGAAGCGGCCATGTCTCTGAATACGGCGGTTCGAATTCCTTTCTCCAATCCTCGGGCGACTCAAGATGGCTTGGTCAGGCACTCTCTCTTTTCTTCGAGAACGACTGTCAGTAAGCCTCGGCAGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAGCATATGTTGGTAGTGGAAGCCAAAGGAAAGAAGGGAATGCAGTCCCGTCAGTTTCAAAAGCCTCCGCCCTTACCTAAGATTGAAGACGATGGCAATCCCAAATTTGTCATCTTCATCCGTATGGCCAATGTTTATCTATGGTACCCGCTTAGTCTTATTACAGGCGGCACCACTGCCAAAATCATGGTCGCAGCAAAGGATACTTTTTTGGGTAAATATATTTACAAAGATACAATTGCTAGAAATCTTGCTGCTGTTATTTATCGGGATGAAAAAGAGATACAGAAGACTGCTGTGAAGCAGTTCCGTGTTCTACGCACCGCAACAGAATTTAGATACGGCTACAAACTTGTGGTATATGTCCAAAAAACCTTTATTTTACAACTGCTAAGCTTTGATCTTCCAACGCCCGACCAGCTTAAGACAGTTGTTGATAAAGTTAAAGACTTCTTCGGGGATGCTAAAGAATCATTCGGCAAGATCACGGCACTAAATTCAAGCGAAAGTGAGAATTCTGATGAGAATTACAAACAAAAGAGCAAG 699 44.78 TEAAMSLNTAVRIPFSNPRATQDGLVRHSLFSSRTTVSKPRQRQRQRQQQQQHMLVVEAKGKKGMQSRQFQKPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLITGGTTAKIMVAAKDTFLGKYIYKDTIARNLAAVIYRDEKEIQKTAVKQFRVLRTATEFRYGYKLVVYVQKTFILQLLSFDLPTPDQLKTVVDKVKDFFGDAKESFGKITALNSSESENSDENYKQKSK 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12493798 12495384 - Bpe025222 Bpe13g00516 113296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00516 233 Pfam Protein HHL1-like 43 175 IPR045388 -
Bpe13g00516 233 PANTHER PROTEIN HHL1 CHLOROPLASTIC 2 229 IPR045388 -
Bpe13g00516 233 MobiDBLite consensus disorder prediction 32 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00516 - - - mcha:111004583 316.235
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1125 Blo01g00376 . Bda01g02197 . Bpe13g00516 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011255 1 2 1 1 1 1 2 0 0 1 0 1 2 1 1 1 1 2 1 1 1 1 1 2 0 0 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00516 Bpe_Chr13 FPKM 57.786247 54.984394 44.514599 47.474018 28.625834 28.938505 29.555126 47.486961 45.558174 46.606583