Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00518 ATGGGCGACGGAGAAATGAGCAAGAAAATGGCGAAGCACAACAGAGAAAGGAGCGTGCTCGCTGTCGCAGGAGTCGCTGCTCTGCTCGCTCTCGCTGTGAACTTCGCTATCTCCGCTTTTAACAAGCAAAGGAAGAAATCAGATCTTCCGGGATCCAAGGTTCGTCTTAATTTATCAGCTTCCGAGATTCTTAAATTAACTGGAAGAATCATCGCCCAGTCGAAGGAGGTTCACGACGCAGTTGCTTCAGTTCCACTTGAAAAGGTTACTTATGCCAATGTTATTTTACCATTAGCTGAACTCGAGGCAGAGCAATTTCCGTTGATCCAATCTTGTGTGTTCCCAAAATTAGTTACTACCTCAGATGATGTACGGAAAGCTAGTGCTGAAGCTGAACGGAAAATAGATGCTCATATTCAGATATGCAGCAAGCGTGACGATGTGTACCGTGTCGTTAAAGCTTTTGCTGCTCGAGGAGAGTGGATAAATTCTGAAGCAAAATGCTACATTCAATATCTAGTGGGAGACTTCGAGCAAAATGGTTTGAACCTTACCTCAACAAAGAGGGAGGAAATGGAGCGATTGAGGCAGCAAATCGATTCATTAAGCCTGCAATATATTCAAAATCTCAATGATGATTGCAGTTTTCTTCTATTTAATGAGGCAGAGCTAGCTGGTTTACCAGAAAAAATACTCGAGAATTTGACAATTTCTAAAAATGGAAAATTCAAGTTGCCCATGAAAAGTCATCACATTGCTGTAGTTCTGGAGCATTGCAAGGTTGGAACAACTAGAAGGATGGTAGCAGAAGCATATGGGAGCAGGTCTGGAGAAGTAAATCTTTCTGTTTTAGAAAATTTGGTGCAGTTGCGCCATAAATTGGCTCGTTTACTTGGCTATTCAAACTATGCTGACTACGCTGTTGACCATAGGATGGCAAAGACACCTTCAAAGGTATTTGAATTCTTAGAGAATATTTCTACCAGTTTGACGGATTTGGCTTCCAGAGAACTTGTTACTTTAAAGGAGTTAAAGAAGAACGAGGAAGGAGATTTTCCGTTTGGGATAGAAGATCTTTTATACTATATCAAGAAGGTAGAAGAGCAACGTCTTAATATAGATTTTGTGGCTCTTAAGCAATACTTTCCTATCAGATTGGTTCTATCTGGTGTCTTTAAAATAGTCCAAGATCTTTTTGGTTTAAGGTTAGAGGAAGTGACTAATGCTGAAGTTTGGCATAGTGATGTAACATTGTTTTCAGTTTTCGACTTAAATTCTGGGGAACTAATCGGTTATTTCTACCTTGATATGTACACAAGGTTTGGAAAGTATGGTCATACCTGTGTGGTGGCTCTTCAAAATAGTGCATTGTGTTACAATGGTGCACGTCAGATACCAGTGGCATTATTTATAGCTCAGTTTCACAAGGATGTTGATGGGCGGCCCGGGTTATTAAGATTCTCTGAAGTGGTCAATCTTCTCCATGAGTTCGGCCATGTGGTCCAACATATTTGCAACCGTGCATCATTTGTTCGATTTTCAGGCCTTCGTGTGGACCCAGATTTTGTTGAGATTCCTTCCCAAATGCTAGAAAATTGGTGTTATGAAAGCTTGTCTTTAAAGTTGTTATCTGGTTTCCATCAGGATATTACGAAGCCTATCAAAGATGAAACTTGTGAATCACTAAAAAGATGGCGATATTCCTTTTCTGCACTTAAATTAAAGCAGGAGATTCTTTATTGTCTTTTTGATCAGATAATACATTCCTCGGACAATATTGACATTGTTGAGTTATTCAAGCATCTTCATCCTAAGGTAATTTCTGAAACTTCCATTATTTTTTGTATTTGCGAGCTATTACATTCAGTTGCGTTTCTCCAGGTGATGTTAGGGTTGCCGATGTTGGAGGGAGCCAGTCCAGCGTCATGTTTTCCACGCAGCGCTATTGGTTATGAAGCTGCATGTTACAGTCGTATTTGGAGTGAGGTCTTTGCATCTGATATGTTTGTGTCAAAGTTTCGTGATGGTCTTTTCAATCAACACGTCGGCATGCAGTTCAGAAACAAGGTATTGGCTCCGGGAGGAGCAAAGGACCCTATCCAAGTGTTGACAGATTTTCTGGGCAGAGAGCCATCGATTCATCCTTTTGTGGACATAAAATCTGAATATATATTTTGA 2178 40.4 MGDGEMSKKMAKHNRERSVLAVAGVAALLALAVNFAISAFNKQRKKSDLPGSKVRLNLSASEILKLTGRIIAQSKEVHDAVASVPLEKVTYANVILPLAELEAEQFPLIQSCVFPKLVTTSDDVRKASAEAERKIDAHIQICSKRDDVYRVVKAFAARGEWINSEAKCYIQYLVGDFEQNGLNLTSTKREEMERLRQQIDSLSLQYIQNLNDDCSFLLFNEAELAGLPEKILENLTISKNGKFKLPMKSHHIAVVLEHCKVGTTRRMVAEAYGSRSGEVNLSVLENLVQLRHKLARLLGYSNYADYAVDHRMAKTPSKVFEFLENISTSLTDLASRELVTLKELKKNEEGDFPFGIEDLLYYIKKVEEQRLNIDFVALKQYFPIRLVLSGVFKIVQDLFGLRLEEVTNAEVWHSDVTLFSVFDLNSGELIGYFYLDMYTRFGKYGHTCVVALQNSALCYNGARQIPVALFIAQFHKDVDGRPGLLRFSEVVNLLHEFGHVVQHICNRASFVRFSGLRVDPDFVEIPSQMLENWCYESLSLKLLSGFHQDITKPIKDETCESLKRWRYSFSALKLKQEILYCLFDQIIHSSDNIDIVELFKHLHPKVISETSIIFCICELLHSVAFLQVMLGLPMLEGASPASCFPRSAIGYEAACYSRIWSEVFASDMFVSKFRDGLFNQHVGMQFRNKVLAPGGAKDPIQVLTDFLGREPSIHPFVDIKSEYIF 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12502735 12509664 - Bpe010224.1 Bpe13g00518 113298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00518 725 Pfam Peptidase family M3 256 717 IPR001567 GO:0004222|GO:0006508
Bpe13g00518 725 Gene3D Collagenase (Catalytic Domain) 383 533 IPR024079 GO:0008237
Bpe13g00518 725 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 42 721 IPR045090 GO:0004222|GO:0006508
Bpe13g00518 725 CDD M3A_TOP 64 716 - -
Bpe13g00518 725 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 55 718 - -
Bpe13g00518 725 Gene3D Endopeptidase. Chain P; domain 1 34 176 IPR024080 -
Bpe13g00518 725 Gene3D Neurolysin, domain 3 189 717 IPR024077 -
Bpe13g00518 725 PANTHER SACCHAROLYSIN 42 721 - -
Bpe13g00518 725 Coils Coil 185 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00518 K01392 THOP1; thimet oligopeptidase [EC:3.4.24.15] - qsu:112015579 1038.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00094 Bpe-Chr3:1431083 Bpe13g00518 Bpe-Chr13:12502735 2.99E-56 dispersed
Bpe13g00518 Bpe-Chr13:12502735 Bpe15g00271 Bpe-Chr15:14125757 1.99E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1134 Blo01g00374 . Bda01g02194 . Bpe13g00518 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0720 . . . . . . . . . . . Bma01g00026 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011877 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00518 Bpe_Chr13 FPKM 45.829872 50.453632 38.027946 34.643845 43.475433 39.574753 41.025604 1.125173 0.997402 0.440723