Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00524 ATTGAAACGGTGGATCACAATCCCGTCGTCGTTATAATTGGAGAGACAGGTTCCGGGAAGAGCACTCAACTCTCACAGATACTTCACAGAAGAGGATATACAAAGTCAGGGACCGTCGGGGTCACTCAGCCTCGTCGAGTGGCCGCTGTCTCTGTTGCCAGACGAGTAGCGAAGGAGCTAGGTGTTCCCCTTGGCGACGAAGTAGGATATGCTATACGATTTGAAGACAGAACTTCAGAAAGAACAAGGATCAAGTATGTTGCTAAACTTGTCCGTGAATTCAGTATTGTAGGCATTATGCTAGATATATTGCTTGGACTTATGAAACGACTGGTTAGACGTCGTACATCCAATTTAAAGGTTCTAATCACTTCAGCAACCCTTGATGGAGATAAAGTATCAAAATTCTTTTCAGATTGCCCTGTTCTGACAATTCCAGGGAAGTTATTTCCCGTTGAAATTTTTTACAGCAATGAGCTTCCTAAAAGCTATATTGAGTCGTCTTTAAAGGCAGCTCTTGATATACACGTACGAGAAGCAGAGGGGGATGTACTAATTTTCATGACGGGACAGGTTCGTGTATTTAGTCCTCCACCACCAAATTGTCGCCGGTTTATTGTTGCCACAAACATAGCTGAAACTTCTTTGACTGTTGATGGTGTTGTGTATGTTATTGATGCCGGTTATGTCAAGCAGCGGCAATATAATCCTTCAACTGGCATGAACTCCCTTGATGTTGTGCAAATTAGCAAAGTGCAAGCAGCGCAGCGTGCGGGACGAGCAGGAAGAACACGTAGCGGGAAATGCTACCGTTTGTACCCAAAGATACTTTATGAGGATAAGTTCCTGGATGTAACAGTTCCTGAAATACAAAGAACTTCTCTTGCTGGCAGTGTTCTTCATTTGAAATCATTGAACCTTTCCGATATTGATATTCTACAATTTGACTTTCTTGATCAACCTACCTATGAGTCTTTAGAAGATGCATTGAAACAACTATATCTCATCGATGCTATTGATGAAAATGGATCAATCACAAGAATTGGACGAATTATGGCTGAGCTTCCTCTAGAACCGTCACTCTCGAGAACCCTTATAGAGGCAAATGAGTATGGTTGTATATCACAGGCTTTGTCTGTTGCTGCTATGCTATCAGCTGAAACCACATTGCTTCCTGGTCGCAGCAAGAGTACTGAAAAGAAAAGAAAGCACATTTCCTCGGACCTCCCGGATGGTTTTGGATGGGGTGATCACATCCAGTTGCTGCAGATCTATGAACACTGGGATCGTAGAAACTATGACATTGACTGGTGTAAAGACAATGGCTTGCAGGTGCGAGGAATGATGTTTGTCAAAGATGTCCGGAAACAGCTGTCTCAGATAATGCAGAAGATAGCAAAGGATGCCAGCAGACGAGTAAAAGACAGGGAGGAGGATTATCAGAGTTTGAGGAAGGCTTTGTGTGTAGGCTATGCTAATCAACTTGCTGAGAGAATGATGTACCACAATGGTTATCGAACTCTAAATTTTAAACCCCTAGTAGTTCAGGTGCATCCATCTTCTGTTCTCAAACCAGACGAAGAAGGAAAGCTTGCTGACTATGTTGTCTACCATGAGCTGATAACGACATCACGCCCATACATGCGCAATGTATGTGCTGTGGACATGAGATGGGTCATGCCCATTTTGAACAAGGTTAAAAATCTGAATGTTAGGAAACTGAGTGGCGGCTCTGGTCCATCAAAGGAGACGATAGAAGGAAAGGGTGAGGATTTTCCAAAGAAAGAGGTTGATGCCACCAAAGCGCCTGATGATCGGGAGAGTAGAGTTCAGGCGGCAAGAGAACGATATTTAGCTCGGAAAGAGAAGAAG 1872 43.48 IETVDHNPVVVIIGETGSGKSTQLSQILHRRGYTKSGTVGVTQPRRVAAVSVARRVAKELGVPLGDEVGYAIRFEDRTSERTRIKYVAKLVREFSIVGIMLDILLGLMKRLVRRRTSNLKVLITSATLDGDKVSKFFSDCPVLTIPGKLFPVEIFYSNELPKSYIESSLKAALDIHVREAEGDVLIFMTGQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDAGYVKQRQYNPSTGMNSLDVVQISKVQAAQRAGRAGRTRSGKCYRLYPKILYEDKFLDVTVPEIQRTSLAGSVLHLKSLNLSDIDILQFDFLDQPTYESLEDALKQLYLIDAIDENGSITRIGRIMAELPLEPSLSRTLIEANEYGCISQALSVAAMLSAETTLLPGRSKSTEKKRKHISSDLPDGFGWGDHIQLLQIYEHWDRRNYDIDWCKDNGLQVRGMMFVKDVRKQLSQIMQKIAKDASRRVKDREEDYQSLRKALCVGYANQLAERMMYHNGYRTLNFKPLVVQVHPSSVLKPDEEGKLADYVVYHELITTSRPYMRNVCAVDMRWVMPILNKVKNLNVRKLSGGSGPSKETIEGKGEDFPKKEVDATKAPDDRESRVQAARERYLARKEKK 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12532976 12539439 - Bpe025223 Bpe13g00524 113304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00524 624 MobiDBLite consensus disorder prediction 574 624 - -
Bpe13g00524 624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 146 IPR014001 -
Bpe13g00524 624 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 483 564 IPR011709 -
Bpe13g00524 624 SMART helicmild6 171 265 IPR001650 -
Bpe13g00524 624 Gene3D - 94 148 IPR027417 -
Bpe13g00524 624 Gene3D - 1 93 IPR027417 -
Bpe13g00524 624 PANTHER ATP-DEPENDENT RNA HELICASE 1 192 - -
Bpe13g00524 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 465 IPR027417 -
Bpe13g00524 624 PANTHER ATP-DEPENDENT RNA HELICASE 191 562 - -
Bpe13g00524 624 CDD SF2_C_RHA 150 273 - -
Bpe13g00524 624 SMART ultradead3 1 155 IPR014001 -
Bpe13g00524 624 Gene3D - 149 192 IPR027417 -
Bpe13g00524 624 Gene3D - 193 285 IPR027417 -
Bpe13g00524 624 Pfam Helicase associated domain (HA2) 329 434 IPR007502 GO:0004386
Bpe13g00524 624 Gene3D - 312 470 - -
Bpe13g00524 624 MobiDBLite consensus disorder prediction 584 624 - -
Bpe13g00524 624 Coils Coil 466 486 - -
Bpe13g00524 624 SMART AAA_5 6 122 IPR003593 -
Bpe13g00524 624 CDD DEXHc_RHA-like 7 145 - -
Bpe13g00524 624 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 132 306 IPR001650 -
Bpe13g00524 624 SMART ha2_5 328 422 IPR007502 GO:0004386
Bpe13g00524 624 Pfam Helicase conserved C-terminal domain 197 264 IPR001650 -
Bpe13g00524 624 PANTHER OS06G0343100 PROTEIN 1 192 - -
Bpe13g00524 624 PANTHER OS06G0343100 PROTEIN 191 562 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00524 K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] - qsu:112022268 957.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00524 Bpe-Chr13:12532976 Bpe11g01066 Bpe-Chr11:7995301 3.90E-101 dispersed
Bpe13g00524 Bpe-Chr13:12532976 Bpe13g00528 Bpe-Chr13:12558610 1.56E-130 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1173 Blo01g00369 . Bda01g02187 . Bpe13g00524 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007202 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 5 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00524 Bpe_Chr13 FPKM 23.280235 13.738801 20.286936 22.8559 14.313979 17.302347 13.49542 31.785158 36.950462 35.433308