Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00529 ATGCCGATCTCTTCCTTTTCGTTACTCCGCCTCCGCATCACCTCCTTCTCCCGTCTCCCCTCTTCCGCAAGCTTCCTGCGTCGCCTCTCAATTTCCGCCAAACAACACCAAAACCCTACAAAACCTCAGCTCAATAAGAACATTCTCAGGGCTAGAAACAACTTCAAGGACTTCTCCTCCCTCGCCCCGTTTCTTTCTCCTGATCACAATTCTCATCTCTCCGAATCTCAAGCCATTGGAACTGTTGCCGCCGCCCAAGCCAACTTCATGCGCGTTATCGTGCAGTCGCAAGTTTCGAATTCAGCGGAGGAAGGTTCGACAGTCGGACTTGAGTTGTTGTGCGTCGTGAAAGCGGTGCTGAAGAAGATAAAGAGAAGGGTTCTGGTGGGGGACAAGGTGGTTGTGGGCTCCATTGATTGGGTGGATCGGAGAGGCGTGATCGAGAATGTGTTCCAGAGAACCTCCGAGATTCTTGATCCACCAGTGGCCAATGTCGACCATTTACTCCTCCTCTTCTCGTTGGAGCACCCAAAGCTAGAGCCTTTCTCACTCACCAGGTTTCTTGTAGAGGCTGAGTCCACCCATATTCCACTCACTCTTGCTCTCAACAAGTTGGAACTTGTTGACGAGGAGACCATGGTGAACTGGAAATCTAGGCTGCAAAAGTGGGGATACGAACCACTATTTTGCAGTGTTGAAACCAGAAGTGGACTCGATTCCTTAGCATTCATTTTGAGAGATCAAACTACTGTCGTCGTTGGTCCTAGTGGAGTTGGGAAATCAAGCCTGATTAATGCTCTTAGAAACAATAACTCTGCTGCTGCTCCTGTAGAGGGTGATAATTGGTTTGAACCTATTTTAGGCAGCAAGTGGTTTCAAGAACAGCGAGTTGGGGAAGTCTCGACGAGAAGTGGCAGAGGGAAGCACACCACTCGCCATGTTTCTCTGCTTCCATTATCTGAAGGGGGTTACCTTGCCGACACTCCTGGATTCAGCCAGCCTAGTTTGTTGAAAGTGACAAAGCAGTCTCTTCCTCTTTATTTCCCAGAGATACAGGAGATGCTCGGTGCCAGCGAAGTTGCAAGATGCTCATTCAAAGATTGCTTGCATCTAGGAGAACCGGGATGCATTGTTAAGGCCAATTGGGAAAGATATCAGTACTATTTTCAACTTGTCGATGAAATTAGGGTGAGGGAAGAGTTTCAGCTGAGGACGTTTGGAACGAAAAGAGAGGGCGATGTAAGGTACAAGGTTGGAGACATGGGTGTTCAACAAGCAGAACCAAGGTTGGAGCCCAAAAAACATAGGAGACAATCTCGCAAGAAACTGAACCAGTCATTGCTGGATGAGTTGGATGAAGAAAATGATCCAATTATGAGAGCACTGGGAAACGAAAACCAT 1401 48.04 MPISSFSLLRLRITSFSRLPSSASFLRRLSISAKQHQNPTKPQLNKNILRARNNFKDFSSLAPFLSPDHNSHLSESQAIGTVAAAQANFMRVIVQSQVSNSAEEGSTVGLELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGVIENVFQRTSEILDPPVANVDHLLLLFSLEHPKLEPFSLTRFLVEAESTHIPLTLALNKLELVDEETMVNWKSRLQKWGYEPLFCSVETRSGLDSLAFILRDQTTVVVGPSGVGKSSLINALRNNNSAAAPVEGDNWFEPILGSKWFQEQRVGEVSTRSGRGKHTTRHVSLLPLSEGGYLADTPGFSQPSLLKVTKQSLPLYFPEIQEMLGASEVARCSFKDCLHLGEPGCIVKANWERYQYYFQLVDEIRVREEFQLRTFGTKREGDVRYKVGDMGVQQAEPRLEPKKHRRQSRKKLNQSLLDELDEENDPIMRALGNENH 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12571022 12573003 + Bpe025224 Bpe13g00529 113309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00529 467 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 154 334 IPR030378 GO:0005525
Bpe13g00529 467 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 78 399 IPR004881 GO:0003924|GO:0005525
Bpe13g00529 467 Gene3D - 71 150 IPR012340 -
Bpe13g00529 467 SUPERFAMILY Nucleic acid-binding proteins 78 153 IPR012340 -
Bpe13g00529 467 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 127 271 IPR004881 GO:0003924|GO:0005525
Bpe13g00529 467 ProSiteProfiles EngC GTPase domain profile. 163 332 IPR010914 GO:0003924|GO:0005525
Bpe13g00529 467 Gene3D Probable gtpase engc; domain 3 338 400 - -
Bpe13g00529 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 396 IPR027417 -
Bpe13g00529 467 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 67 455 - -
Bpe13g00529 467 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 67 455 IPR004881 GO:0003924|GO:0005525
Bpe13g00529 467 Pfam RsgA GTPase 150 336 IPR010914 GO:0003924|GO:0005525
Bpe13g00529 467 CDD YjeQ_EngC 163 393 IPR004881 GO:0003924|GO:0005525
Bpe13g00529 467 Gene3D - 151 336 IPR027417 -
Bpe13g00529 467 MobiDBLite consensus disorder prediction 425 447 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00529 K06949 rsgA, engC; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] - tcc:18609029 691.034
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1221 Blo01g00361 . Bda01g02182 . Bpe13g00529 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00013 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010562 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00529 Bpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.105022 0.0 0.050497 0.040844 0.0 0.0