Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00531 ATGGAGTTTTCTCAGGAAGATTTCGATCGCCTCCTCCTGTTCGAGCACACCAGAAAAGTTGCCGAAGTTAACTATGCCAAGGACCCTCTCGACGCCGATAATCTATTGAAGTGGGGAGGAGCATTGCTCGAATTGTCACAGTTCCAAAATGTTGCAGACTCCAAGGCTATGATCAAAGATGCTGAGCTAAAGCTGGAGGAGGCTTTGCAAATCAATCCCCTCAAGCACGAAGCGTTATGGTGTCTGGGAAATGCTCACACCTCTCATGCGTTTCTAACACCTAACCCCGAAGAGGCTAAAGTTTATTTTGATAAAGCACATGAATGCTTCCAAAAAGCTGTTGATGGGGACCCCAGTAATGAACTCTATCTCAAGTCTTTGGAAGTCACAACAAAGGTGATTACTTTCTTTCTATTTGGTCTTGGGAGGGGTCAGGTTCTCAAGGAGAGTCTGCATCTTATAGATTTGTTTTTTTCTTTGATGATGCATGTGGATGTTATATTGAAGTTAATGACCCTGCTCACTCAGGCACCAGACTTTCACTCGGAGCTACATAAGCATGGACTTGATCAACAGATTGCTGGCGGGACATCTGCTACTTCTGCATCTGCTTCCTCGATTCCAAAGAGTTCAAAGAAGAAGAAGAAGAGCGAGGATTTCAAATACGACGTATTTGGATGGATAATACTGGCAGTCGGGATCGTTGCATGGGTAGGAATGACAAAGTCCCATGTTCCTCCACAGCCTCCCCAAATGAGGCCGGATGCATTCATGCTACAAGTAGACTCATTATGTAATCCACAATTCCTTGTTATAGTATTATTGTCTTTTCGATGTATTATTTTGTTCGATGTAGGTTTCTATCTGTTACTTTGCTGCTGGAGAATAGTTGAAATCTTCCTAAGATTGGAATTCTCAGCTTTGAAAATGCAGAGAAAAAAGAAAAATTCTGGAAGAAATGGTTCACAAGAACTCGCCAATTCCAAGGTCTCAAGAGCTCAAAGGAAGGTTTCAGAGAGTTCACAGGTCACAGAAAAGAACGTATCAGAACTAATTGCATCTTCAGCAAGAAAACAGGCTCGAGCTGAAGTGTTTCCGAAAAAGAGTGTGGAATCTAGGTATTGTTCATTAAGAGATGAGACTTCCGGTGCTTGTTTAGCTCCTGAGGCAACTAAAGCTGTGTCTTGCAAGAGTTATCATCATGAACTATCTCATGCTGGTTCAGAATCTATCTTTTCTCCTTTTCACATACCTAAACATGCTGAAGCAGACACGCCTGAGGGAGAATTAGAAGGAAAAGCTTTATCATCTGAAGTCTCAGCGATATATCTGGCTATGAAAAACTCTAGGCTGGAATGCGTTGATGAGCATGATCAAAATCATCTTGCTACTGAAGGATACATGCAGGAGGATGAAGATGAAGAGTTTGATGATTTTGATCCTTATTTCTTCATCAAGAACTTGCCAGAGTTGGCAGCAGTAGTCCCAACATATCGTCCTCTGCTTCTACCCAAACAGACACGGAGTTGCCCTCCCACTACTCTTGTTTTAGACTTGGATGAGACTTTGGTGCATTCCACTCTAGAACCTTGTGTCGATGCAGACTTTACTTTTCCCGTCAATTTTAACCTCCAGAAGCATACAGTTTATGTTCGATGCCGCCCTTATCTTAAAGATTTTATGGAGAGGGTTTCTGGATTTTTTGAGATTATTATTTTTACTGCTAGTCAAAGCATTTATGCCGAGCAACTCTTAAATGTTCTTGATCCAAAGAGAAAGACCTTTAGACATCGTGTCTTTCGTGAATCTTGTGTTTTTGTTGATGGGAATTACCTCAAAGATTTATCCATTCTTGGTCGTGATTTGGCACATGTGATTATAGTTGACAACTCTCCACAGGCATTTGGGTTTCAAGTGGACAATGGGATACCAATAGATAGCTGGTTTGATGATCGTTCAGATAAAGAGCTGCTTTTATTGCTACCATTCTTGGAGAGCTTGATTGGGGTTGAAGATGTTCGACCAATGATAGCTAGAAAGTTCAACACTAGGGGAAAAATAGCTGCAGCCGTTTATCCTTGCCAAAATGCCAACAGAGGCGAGAATTTTGAAAGGTGA 2118 41.69 MEFSQEDFDRLLLFEHTRKVAEVNYAKDPLDADNLLKWGGALLELSQFQNVADSKAMIKDAELKLEEALQINPLKHEALWCLGNAHTSHAFLTPNPEEAKVYFDKAHECFQKAVDGDPSNELYLKSLEVTTKVITFFLFGLGRGQVLKESLHLIDLFFSLMMHVDVILKLMTLLTQAPDFHSELHKHGLDQQIAGGTSATSASASSIPKSSKKKKKSEDFKYDVFGWIILAVGIVAWVGMTKSHVPPQPPQMRPDAFMLQVDSLCNPQFLVIVLLSFRCIILFDVGFYLLLCCWRIVEIFLRLEFSALKMQRKKKNSGRNGSQELANSKVSRAQRKVSESSQVTEKNVSELIASSARKQARAEVFPKKSVESRYCSLRDETSGACLAPEATKAVSCKSYHHELSHAGSESIFSPFHIPKHAEADTPEGELEGKALSSEVSAIYLAMKNSRLECVDEHDQNHLATEGYMQEDEDEEFDDFDPYFFIKNLPELAAVVPTYRPLLLPKQTRSCPPTTLVLDLDETLVHSTLEPCVDADFTFPVNFNLQKHTVYVRCRPYLKDFMERVSGFFEIIIFTASQSIYAEQLLNVLDPKRKTFRHRVFRESCVFVDGNYLKDLSILGRDLAHVIIVDNSPQAFGFQVDNGIPIDSWFDDRSDKELLLLLPFLESLIGVEDVRPMIARKFNTRGKIAAAVYPCQNANRGENFER 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12586534 12594213 + Bpe010235.2 Bpe13g00531 113311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00531 705 SUPERFAMILY HAD-like 502 678 IPR036412 -
Bpe13g00531 705 Pfam Plant specific mitochondrial import receptor subunit TOM20 166 242 - -
Bpe13g00531 705 Pfam Plant specific mitochondrial import receptor subunit TOM20 8 133 - -
Bpe13g00531 705 Pfam NLI interacting factor-like phosphatase 514 674 IPR004274 -
Bpe13g00531 705 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 513 677 IPR011948 GO:0016791
Bpe13g00531 705 MobiDBLite consensus disorder prediction 320 342 - -
Bpe13g00531 705 PANTHER INTERACTING FACTOR, PUTATIVE, EXPRESSED-RELATED 310 691 - -
Bpe13g00531 705 CDD HAD_FCP1-like 514 645 - -
Bpe13g00531 705 ProSiteProfiles FCP1 homology domain profile. 508 667 IPR004274 -
Bpe13g00531 705 Coils Coil 51 71 - -
Bpe13g00531 705 SUPERFAMILY TPR-like 25 127 IPR011990 GO:0005515
Bpe13g00531 705 Gene3D - 497 681 IPR023214 -
Bpe13g00531 705 SMART forpap2 511 655 IPR004274 -
Bpe13g00531 705 Gene3D Tetratricopeptide repeat domain 1 138 IPR011990 GO:0005515
Bpe13g00531 705 MobiDBLite consensus disorder prediction 316 342 - -
Bpe13g00531 705 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 310 691 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00531 K17616 CTDSPL2; CTD small phosphatase-like protein 2 [EC:3.1.3.-] - cit:102606789 525.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01073 Bpe-Chr2:13484136 Bpe13g00531 Bpe-Chr13:12586534 1.05E-25 dispersed
Bpe09g00632 Bpe-Chr9:14984906 Bpe13g00531 Bpe-Chr13:12586534 4.79E-09 dispersed
Bpe11g00582 Bpe-Chr11:4432647 Bpe13g00531 Bpe-Chr13:12586534 2.55E-10 dispersed
Bpe13g00531 Bpe-Chr13:12586534 Bpe14g00214 Bpe-Chr14:2384048 1.00E-77 dispersed
Bpe13g00531 Bpe-Chr13:12586534 Bpe03g01001 Bpe-Chr3:29535246 2.29E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1244 Blo01g00357 . . . Bpe13g00531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002827 1 3 1 1 2 1 3 1 1 1 1 1 2 2 2 2 1 3 2 1 1 2 2 2 1 2 2 4 5 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00531 Bpe_Chr13 FPKM 21.748148 24.586803 40.43832 39.443874 16.816589 19.62208 18.377666 38.11787 36.667805 41.439968