Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00536 ATGGCTTCCCCTGCTATTGCTCCAGCGTCTACTTCCTTCATCGTCAACAAGAAAGACCTCAATCTCTCTGCTTTTACTCTTTCCTCACCGTTTTCGTCTCAGCGATGCGGAAGAACGCTTTCCAAGAAAATTGTTTCGGTTATGGCACCTCAACAAATGGAACGCAAGCCTTCCGCCACTGGCTCAGTCAAGACGGCGATGACAATGACGGAGAAGATATTGGCTAGAGCCTCTGAGAAACCACACTTAAGCCCTGGGGAAAACGTTTGGGTTAATGTTGATGTTTTAATGACCCACGATGTTTGTGGTCCTGGTTCTATAGGAATTTTCAAAAAGGAATTTGGTGAAAATGCCAAGGTTTGGGATCGGGAGAAGATTGTAATTATTCCTGACCATTATATCTTTACGAGTGATGAACGGGCAAACCGCAACGTAGACATTCTTAGGGATTTTTGCAAAGAGCAGAACATCAAGTACTTTTATGACATTAAAGATCTTAGTAATTTTAAGGTAAACCCAGACTACAAAGGTGTCTGCCATATTGCTCTTGCTCAAGAAGGCCATTGCAGGCCGGGAGAGGTCTTGCTTGGTACAGACTCTCATACTTGTACTGCTGGAGCATTTGGCCAGTTTTCAACCGGCATTGGTAATACTGATGCGGGATTTGTGTTAGGAACTGGGAAATCCCTTCTCAAGGTCCCTCCAACCTTGAGATTTGTCATAGATGGGGAAATGCCTGACTTTTTGCTAGCCAAAGATTTGATTTTGCAAATTATTGGTGAAATATCTATGTCTGGAGCTACATACAAAGCTATGGAGTTTGTTGGCACAGCAGTTGAAAGATTAAATATGGAAGAGAGGATGACATTATGCAACATGGTTGTTGAAGCTGGAGGAAAGAATGGTGTTGTCCCTCCTGATTCTACTACATACAAATATTTGGAGGATAAGACATCTGTAGCCTACGAACCAGTATACAGTGATGGAAATGCAAGGTTTCTTTCTGAGTATAGATTCGATGTTTCAAAATTGGAACCTTTGGTGGCCAAGCCCCATTCCCCTGATAACCGGGCTTTGGCAAGGGAATGCAAAGATGTAAAAATTGACCGAGTATATATAGGATCCTGTACTGGAGGAAAAACAGAGGACTTTCTTGCTGCCGCTAAAGTTTTTCTTGCAGCTAGAAAGAAGGTGAAAGTTCCAACATTTCTCGTACCCGCCACCCAAAAGGTATGGATGGATTTGTACAGTCTTCCTGTACCTGGGGCCGGTGGGAAAACTTGTTCCCAGATATTCGAAGAAGTTGGATGTGACACTCCTGCGAGTCCTAGTTGCGGTGCTTGTTTAGGGGGCCCTAAAGACACTTATGCACGGATGAACGAAGCTCAGGTTTGTGTGTCAACGACCAATAGGAACTTCCCAGGAAGAATGGGACACAAGGAAGGCCAAATTTATCTGGCCTCTCCATATACAGCAGCTGCATCTGCTTTGACTGGTTCCGTCACGGATCCTAGAGAGTTCTTGCACTAG 1530 44.18 MASPAIAPASTSFIVNKKDLNLSAFTLSSPFSSQRCGRTLSKKIVSVMAPQQMERKPSATGSVKTAMTMTEKILARASEKPHLSPGENVWVNVDVLMTHDVCGPGSIGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCKEQNIKYFYDIKDLSNFKVNPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFSTGIGNTDAGFVLGTGKSLLKVPPTLRFVIDGEMPDFLLAKDLILQIIGEISMSGATYKAMEFVGTAVERLNMEERMTLCNMVVEAGGKNGVVPPDSTTYKYLEDKTSVAYEPVYSDGNARFLSEYRFDVSKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLAARKKVKVPTFLVPATQKVWMDLYSLPVPGAGGKTCSQIFEEVGCDTPASPSCGACLGGPKDTYARMNEAQVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGSVTDPREFLH 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12677764 12683595 + Bpe010240.1 Bpe13g00536 113316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00536 509 Pfam Aconitase family (aconitate hydratase) 87 499 IPR001030 -
Bpe13g00536 509 PANTHER HOMOACONITASE, MITOCHONDRIAL-RELATED 6 508 - -
Bpe13g00536 509 Gene3D Aconitase, domain 3 349 507 IPR015931 -
Bpe13g00536 509 SUPERFAMILY Aconitase iron-sulfur domain 63 507 IPR036008 -
Bpe13g00536 509 CDD IPMI 95 501 IPR033941 GO:0003861
Bpe13g00536 509 PRINTS Aconitase family signature 190 203 IPR001030 -
Bpe13g00536 509 PRINTS Aconitase family signature 280 293 IPR001030 -
Bpe13g00536 509 PRINTS Aconitase family signature 437 450 IPR001030 -
Bpe13g00536 509 PRINTS Aconitase family signature 204 219 IPR001030 -
Bpe13g00536 509 PRINTS Aconitase family signature 266 279 IPR001030 -
Bpe13g00536 509 TIGRFAM hacA_fam: homoaconitate hydratase family protein 68 505 IPR006251 GO:0008652|GO:0016836|GO:0051539
Bpe13g00536 509 PANTHER DEHYDRATASE, PUTATIVE-RELATED 6 508 - -
Bpe13g00536 509 Gene3D Aconitase, domain 3 68 346 IPR015931 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00536 K01703 leuC, IPMI-L; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] - qsu:111996529 925.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00536 Bpe-Chr13:12677764 Bpe14g00709 Bpe-Chr14:5526195 1.72E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0354 Cone4ag0366 . . . . . Blo07g00289 Bda11g00650 . . Bpe13g00536 . Bma06g01618 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010244 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00536 Bpe_Chr13 FPKM 15.61459 18.44492 28.88751 33.037132 0.233636 0.146914 0.0 0.597686 0.680057 0.615027