Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00538 ATGAACTGCTCCATCTCCGGTGAGGTGCCGGAAGAGCCGGTTGTTTCTACGAAATCCGGTTTGCTCTACGAGAAGCGTTTAATCCAGCGGCATATATTGGACTATGGAAAATGCCCAATCACCGGAGAATCACTTTCCATGGATGATGTTGTTCCAATTAAAACTGGCAAGATAGTAAAGCCCAGACCTGTTCAAGCTGCTAGCATTCCTGGCATGTTAGGAATGTTCCAGAATGAATGGGATGGATTGATGCTATCTAATTTTGCACTTGAACAACAACTGCATACGGCTAGACAAGAGCTTAGCCATGCCTTGTACCAGCATGATGCTGCATGTCGAGTGATCGCGAGGCTTAAAAAAGAAAGGGATGAAGCTAGGGCATTACTTGCTCAAGCTGAAAGGCAAATGCCCGTTGTAGGATCAGCACCAGTTGTAAATGCTTCCGTTCATAGCAACGGGAAAAGAGGCGCTGAAGATCAAGAGTTGGGCCCTGATGGAAAAAGAATGCGCCCGGGAATAACTACTACTATCATCTCTGAGCTAACAGAGTGTAATGCTGCACTTTCACAGCAACGGAAAAAGCGACAGATACCAGCAACTTTGGCTCCTGTTGATCGTTTGGGGGGGTATACCCAGATATCTAGTCATCCTCTCCATAAAACGAGCAAACCAGGCATTTTATCTCTCGACGTTCATTACAGCAAGGACTTAGTTGCTACTGGTGGGCTTGACTCCAATGCTGTAATTTTTGATCGACCTTCAGGACAGATTTTATCAACACTTACTGGTCATTCTAAGAAGGTGACTAGTGTTAAGTTTGTGGGACAAGAGGCATTATTCTTGACTGGTTCGGCTGATAAGACTGTTCGCATTTGGCAAAGCTCTGATGATGGGAACTATAATTGTAGGCATATCTTAAAAGATCATACTGCTGAGGTCCAAGCAGTTACAGTTCATGCTACAAACAACTACTTTGTGACCGCATCTCTTGATAACACATGGTGTTTTTATGAAATTGCTTCTGGATTATGTCTAGCACAGGTCGCTGACACTTCAGGAACGGAGGGCTACACATCAGCAGCCTTTCACCCTGACGGTCTTATCCTTGGAACAGGTACATCTGAGGCTCTTGTTAAGATTTGGGATGTAAAAAGTCAGACAAATGTTGCCAGATTTGATGGACATGTTGGAGCTGTAACTGCAATTTCTTTTTCAGAAAATGGTTACTTCCTTGCGACTGCTGCTCATGATGGTGTAAAGCTGTGGGATCTACGCAAATTGAAGAACTTCCGGACGTTTTCTCCATATGATTTAGATACACCATCAAACTCTGTTGAATTTGACCAAAGTGGAAGTTACCTTGCAATTGGAGGATCAGATACAAGGGTTTACCAAGTTGCAAGCGTTAAATCTGAGTGGAATTGTATCAAGACCATTCCAGATTTGTCTGGAACTAGTAAAGCAACGTGCATCAAATTCGGTCCAGATGCAACATACTTAGCAGTAGGATCAATGGATCGAAACCTCCGGATATTTGGTTTGCCCGGGGAAGATGGTCCAACTGAGTCATAA 1572 43.83 MNCSISGEVPEEPVVSTKSGLLYEKRLIQRHILDYGKCPITGESLSMDDVVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARALLAQAERQMPVVGSAPVVNASVHSNGKRGAEDQELGPDGKRMRPGITTTIISELTECNAALSQQRKKRQIPATLAPVDRLGGYTQISSHPLHKTSKPGILSLDVHYSKDLVATGGLDSNAVIFDRPSGQILSTLTGHSKKVTSVKFVGQEALFLTGSADKTVRIWQSSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYEIASGLCLAQVADTSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDLDTPSNSVEFDQSGSYLAIGGSDTRVYQVASVKSEWNCIKTIPDLSGTSKATCIKFGPDATYLAVGSMDRNLRIFGLPGEDGPTES 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12699788 12706345 - Bpe010242.1 Bpe13g00538 113318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00538 523 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Bpe13g00538 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 391 IPR001680 GO:0005515
Bpe13g00538 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 425 - -
Bpe13g00538 523 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 523 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Bpe13g00538 523 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Bpe13g00538 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 293 IPR001680 GO:0005515
Bpe13g00538 523 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Bpe13g00538 523 Coils Coil 115 135 - -
Bpe13g00538 523 SUPERFAMILY WD40 repeat-like 223 512 IPR036322 GO:0005515
Bpe13g00538 523 MobiDBLite consensus disorder prediction 148 170 - -
Bpe13g00538 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 293 - -
Bpe13g00538 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Bpe13g00538 523 Gene3D - 205 514 IPR015943 GO:0005515
Bpe13g00538 523 SMART WD40_4 209 251 IPR001680 GO:0005515
Bpe13g00538 523 SMART WD40_4 254 293 IPR001680 GO:0005515
Bpe13g00538 523 SMART WD40_4 299 338 IPR001680 GO:0005515
Bpe13g00538 523 SMART WD40_4 341 382 IPR001680 GO:0005515
Bpe13g00538 523 SMART WD40_4 472 513 IPR001680 GO:0005515
Bpe13g00538 523 SMART WD40_4 385 423 IPR001680 GO:0005515
Bpe13g00538 523 SMART WD40_4 426 465 IPR001680 GO:0005515
Bpe13g00538 523 CDD RING-Ubox_PRP19 3 54 - -
Bpe13g00538 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 432 IPR001680 GO:0005515
Bpe13g00538 523 SUPERFAMILY RING/U-box 1 53 - -
Bpe13g00538 523 CDD WD40 225 512 - -
Bpe13g00538 523 Pfam WD domain, G-beta repeat 474 512 IPR001680 GO:0005515
Bpe13g00538 523 Pfam WD domain, G-beta repeat 388 423 IPR001680 GO:0005515
Bpe13g00538 523 Pfam WD domain, G-beta repeat 255 292 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe13g00538 Bpe14g01276 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00538 Bpe-Chr13:12699788 Bpe15g00937 Bpe-Chr15:19144873 2.47E-10 dispersed
Bpe13g00538 Bpe-Chr13:12699788 Bpe14g01276 Bpe-Chr14:9652062 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00538 K10599 - vvi:100249408 907.901