Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00541 ATGAAAGACACAGGGGCGACGGAGGCGAATGGCCCCTTATTCGATTCTGCAGAAGCTGAAAAACCAGAGGACTCTGTCGATGGAGAAGATTTCAACGAATCGAAATCGCTTTTGCGGCCACGAAAGGGTGGCATGGCGAGGAAATCAGAGAAAACGAGGCGGAAAGTTCAGTGGAAAGATAAAAATGGGAATGAGCTGGTGGAGATTTTAGAGTTCGAACCAAGCGACGGGAGCGATTCCGACGAGGAAGACAACGATTCGTGCGTCTGTACCATATTGTAG 282 49.29 MKDTGATEANGPLFDSAEAEKPEDSVDGEDFNESKSLLRPRKGGMARKSEKTRRKVQWKDKNGNELVEILEFEPSDGSDSDEEDNDSCVCTIL 93
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12713349 12713787 + Bpe010245.1 Bpe13g00541 113321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00541 93 MobiDBLite consensus disorder prediction 50 67 - -
Bpe13g00541 93 MobiDBLite consensus disorder prediction 72 86 - -
Bpe13g00541 93 MobiDBLite consensus disorder prediction 1 93 - -
Bpe13g00541 93 PANTHER OS03G0138400 PROTEIN 23 92 - -
Bpe13g00541 93 PANTHER LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTIC 23 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00541 - - - tcc:18603285 113.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01105 Bpe-Chr5:23440323 Bpe13g00541 Bpe-Chr13:12713349 2.13E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g767 . . . . . . . . . . . Cma14g01836 . Car14g01644 . . Cpe03g01537 Bhi01g00111 . . . . . . . . . . . . . . . . . Lsi05g01761 . . . . . Bda11g00645 . . Bpe13g00541 . . . . . . . . . . . . . . . . . . Cla05g00418 Cam05g0456 Cec05g0463 Cco05g0465 Clacu05g0453 Cmu05g0431 Cre05g0492 . . Chy06g00442 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003341 2 1 2 2 1 1 2 1 1 1 1 1 1 0 1 2 1 2 2 1 1 2 2 1 2 1 2 3 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00541 Bpe_Chr13 FPKM 1.255226 0.902911 20.632235 16.805918 168.74324 158.715347 148.145782 4.639133 3.414809 4.516109