Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00555 ATGGGGCAACACCAATCCAAAGACGAGCTTCTTTACCAGCAAGTTAGCTACGGCAACACAGAAGGGATCAAAGCCCTTTGTCGAGACGGCGCGGGGCTTGAGCGGATTGACAGGGAAGGAAAAACTCCTTTGATCGTGGCTTGTTTGAACCCTGAACTTTTTAATGTGGCGAAAACTTTGGTAGAACTTGGTGCTAATGTCAATGCTTATCGGCCGGGTCGTAATGCTGGCACTCCTTTACACCATGCTGCTAAAAGAGGTCACGTGCATACTGTCAAGTTACTTCTTTTTAATGGAGCTAATTCCTTAATAATGAATGACGATTGTCAAACTCCATTAGAAGTTGCTAGAGCGAAAGGCCATGGAAATGTTGTTCGTGCTATTGAGGCCTGTCATTTTCATATTTGTTTGTTCTCTGGTTGGTTGCGTGAGTTTCATGGCCCTGGATTCTTTGAAGTTCTTGCTCCTCAGTTGGTCTCAAGAAAAGTTTGGGTGGTTGTTCTACCATGTGGTTCCCGAAATCCTACGAAGCCTTATAAGTTGGAGCTTGTTATATACTTCAGTATACAGGATGCTGTACCACATACAGTTATTGCATTGTGGAAATGCAATTTGGAGGAACCGAAGTTGCAGCATTCTGATCCTTCGGTTATTATTGTGGACAATGTAGCTAGTGAGATATTCATCTGGTGCCTTCCTTCTGTTATGCTGACTGATTGTTTTAGCTCTTTTGTCGATATTCAGATTTACAAAAACTGTTTGATTCTCCAGGGTAATCCCATCTCTTTGTATCTTGTGATGCCTCCTTCATTTATGAATAATAACCAGATTCGAGTTCGTCAAGCAACTGGACCACCAGCTACTGAAGATTTGGAACTCGCCATGGCCATCAATGCATCCATCCATTCAGCTATGCAGGAGAGACCACCCTTATTTGACTCTCACCATAACTCCGAAGCAGGGGCCTCCAGTAGCTGGAACAACCCTAGCCACATCGGTGCAGGTCCACCATTGTCATCTGCACCTCCAAAAACAAGTACTAGTAATTGGGAAGTCCATGAAGCTGGTCAAGGAAGCAACTTAACTCAGCATCCTCATATTGAGAGTAACACCCCTTCCGTTGAAACAATTGGCGGAATGGCTTCAGTCCCGTCCGCACCAATATCTGTAGGTGAGAGTTCTGAAGAGGGTTCTGTTCTCTATCCATCAATTGATGCCAGCCTTATTGACTTGTCATCCGTAACTGTTGAGAACATAGCTTCAACAGAAGTTGAAAAGAAAGATGATGGGGGAACGTGTATAATATGTTTGGTTTGCGATGATCGACATTCAGAACTGATTCCCTGCTTAGACAGGAATCTCATATATCAAATGAGATTGAAACTCGACTTGTCGTTGATGGAGCACTATGAAAGACATTGCCCTCCTCCTGAGAGACGATTCAACTGTCTCATTCCCCCTCCTCATGGATACAAGGTCCCAGTCAAGTGGCCAAAAAGCAGAGATGAAGTATGGAAAGTAAACATTCCTCACACTCACCTTGCACATGAGAAATCGGACCAGAATTGGATGGTGGTGAAAGGTGAAAGGATTGTATTCCCGGGGGGAGGCACACATTTTCACTATGGAGCTGACAAGTATATTGCATCACTTGCTAATATGCTCAACTTTTCAAACGACAATCTAAACAATGAAGGGAGATTGAGAACAGTTCTTGATGTTGGATGTGGGGTTGCCAGTTTTGGAGCCTATCTTCTTTCTTCTGATATTATAGCAATGTCATTAGCGCCTAACGACGTGCATCAAAACCAAATTCAGTTTGCTTTAGAACGAGGAATTCCGGCTTATCTTGGCGTTTTAGGGACCAAGAGACTCCCTTACCCTAGCCGATCTTTTGAACTTGCCCACTGTTCTCGTTGTAGGATTGATTGGCTCCAGAGAGGTGGTATTCTTCTCCTCGAGCTGGATAGGGTGCTCAGACCGGGAGGCTATTTTGCGTATTCATCTCCTGAAGCTTATGCACAGGATGAGGAGGATCTAAAGATATGGAGAGAAATGAGCACGCTGGTAAAGCAAATGTGTTGGACGATAGCTGAGAAGAAAAATCAAACTGTAATTTGGCAAAAACCTCTTACAAACGATTGCTATAAGGAGAGAGAGCCTGATGTCCACCCTCCGCTTTGCCGGTCTGATGAGGATCCTGATGCAACATGGGGCGTGCAGATGGAGGCTTGTATCACTCCTTACTCAGAGCATGACCATAGAACTAAAGGAAGTGGTTTGGCTCCATGGCCAGCTAGGCTGACCTCTCCCCCGCCCAGACTTGCTGATTTCGGCTATTCAACTGAAATGTTCGAAAAGGACACTGTAATTGAAACACCATTGATTCAAACAGTCGTTAAATTTTGCTTTTATGTGCAGGAGCTTTGGCGAAAGAGAGTCGAAAGCTACTGGAATTTACTAAGTCCAAAGATCGAATCGAATACTCTGAGGAACTTGATGGACATGAAGGCGAATATGGGGTCATTTGCAGCTTCTTTGAAAGATAAAGATGTTTGGGTGATGAATGTTGTACCTGAAGATGGACCCAATACGCTTAAGTTGATTTACGACAGAGGCCTCATCGGCGCCACTCACAGCTGGTGTGAAGCCTTCTCGACATACCCTCGAACGTACGATCTACTCCATGCATGGACGGTATTTTCCGACATGGAGAAAAAGGAATGCAGTGCGGAGGATTTATTAATGGAGATGGATCGCATACTTAGACCCACTGGTTTCGTAATTATCAGGGACAAACAGCCGGTGATCGACTTTGTCAAAAAGTATCTTCCAGCATTGCACTGGGAGGCTGTGGCCAATTCGGATTTGGACAGTGATGGAGAAGAAGTGGTGCTTATCGTCCAGAAGAAAGTTTGGCTGACGAGCGATAGCGTCCGGAATGTAGAATAG 2952 44.65 MGQHQSKDELLYQQVSYGNTEGIKALCRDGAGLERIDREGKTPLIVACLNPELFNVAKTLVELGANVNAYRPGRNAGTPLHHAAKRGHVHTVKLLLFNGANSLIMNDDCQTPLEVARAKGHGNVVRAIEACHFHICLFSGWLREFHGPGFFEVLAPQLVSRKVWVVVLPCGSRNPTKPYKLELVIYFSIQDAVPHTVIALWKCNLEEPKLQHSDPSVIIVDNVASEIFIWCLPSVMLTDCFSSFVDIQIYKNCLILQGNPISLYLVMPPSFMNNNQIRVRQATGPPATEDLELAMAINASIHSAMQERPPLFDSHHNSEAGASSSWNNPSHIGAGPPLSSAPPKTSTSNWEVHEAGQGSNLTQHPHIESNTPSVETIGGMASVPSAPISVGESSEEGSVLYPSIDASLIDLSSVTVENIASTEVEKKDDGGTCIICLVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPHGYKVPVKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGERIVFPGGGTHFHYGADKYIASLANMLNFSNDNLNNEGRLRTVLDVGCGVASFGAYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRGGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLKIWREMSTLVKQMCWTIAEKKNQTVIWQKPLTNDCYKEREPDVHPPLCRSDEDPDATWGVQMEACITPYSEHDHRTKGSGLAPWPARLTSPPPRLADFGYSTEMFEKDTVIETPLIQTVVKFCFYVQELWRKRVESYWNLLSPKIESNTLRNLMDMKANMGSFAASLKDKDVWVMNVVPEDGPNTLKLIYDRGLIGATHSWCEAFSTYPRTYDLLHAWTVFSDMEKKECSAEDLLMEMDRILRPTGFVIIRDKQPVIDFVKKYLPALHWEAVANSDLDSDGEEVVLIVQKKVWLTSDSVRNVE 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12776621 12785536 - Bpe010258.3 Bpe13g00555 113335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00555 983 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Bpe13g00555 983 Pfam Ankyrin repeats (3 copies) 75 127 IPR002110 GO:0005515
Bpe13g00555 983 Gene3D Vaccinia Virus protein VP39 541 718 IPR029063 -
Bpe13g00555 983 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Bpe13g00555 983 PANTHER METHYLTRANSFERASE PMT1-RELATED 414 980 - -
Bpe13g00555 983 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Bpe13g00555 983 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 807 935 IPR029063 -
Bpe13g00555 983 SMART ANK_2a 75 104 IPR002110 GO:0005515
Bpe13g00555 983 SMART ANK_2a 39 69 IPR002110 GO:0005515
Bpe13g00555 983 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 445 970 IPR004159 GO:0008168
Bpe13g00555 983 Gene3D - 3 142 IPR036770 -
Bpe13g00555 983 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 471 718 IPR029063 -
Bpe13g00555 983 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Bpe13g00555 983 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 414 980 IPR004159 GO:0008168
Bpe13g00555 983 MobiDBLite consensus disorder prediction 309 380 - -
Bpe13g00555 983 MobiDBLite consensus disorder prediction 317 378 - -
Bpe13g00555 983 SUPERFAMILY Ankyrin repeat 9 132 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00555 - - - csv:101204871 985.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00555 Bpe14g01260 CCT
Bpe13g00555 Bpe14g01260 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01391 Bpe-Chr4:20577858 Bpe13g00555 Bpe-Chr13:12776621 8.11E-154 dispersed
Bpe08g00290 Bpe-Chr8:1757858 Bpe13g00555 Bpe-Chr13:12776621 7.18E-14 dispersed
Bpe09g00522 Bpe-Chr9:13994955 Bpe13g00555 Bpe-Chr13:12776621 0 dispersed
Bpe11g01531 Bpe-Chr11:11407585 Bpe13g00555 Bpe-Chr13:12776621 0 dispersed
Bpe13g00555 Bpe-Chr13:12776621 Bpe15g01271 Bpe-Chr15:21135791 4.36E-153 dispersed
Bpe14g01260 Bpe-Chr14:9514072 Bpe13g00555 Bpe-Chr13:12776621 0 transposed
Bpe13g00555 Bpe-Chr13:12776621 Bpe14g01258 Bpe-Chr14:9503048 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g719 . . . . . Bpe14g01260 . . Cmo08g01055 Cmo17g00158 . . . . . . . . . . . . . . Cla06g00670 Cam06g0719 Cec06g0727 Cco06g0735 Clacu06g0710 Cmu06g0696 Cre06g1467 Cone14ag0151 Cone15ag0164 Cone7ag0327 Cone4ag0331 . Csa02g01057 Chy05g00317 . Blo02g00749 Blo07g00267 . . . Bpe13g00555 Bma02g00776 Bma06g01603 Sed12g1127 . . Cma08g01080 Cma17g00160 Car08g00955 Car17g00141 Cpe12g00137 Cpe17g00197 Bhi12g01613 Tan06g2406 Cmetu05g0199 Lac12g2163 Hepe03g0289 . Lcy13g0380 . . . . . . . Lsi09g01230 . . Cme05g00573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000948 3 5 3 5 4 2 4 2 2 2 2 2 4 2 2 4 2 5 3 2 3 2 2 2 2 2 2 4 3 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00555 Bpe_Chr13 FPKM 19.35108 21.031523 13.362302 13.674706 18.418526 19.649086 16.930042 18.794174 18.962852 16.368338