Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00558 ATGGGAAGTGGAAATAAAACCATAATTTGGTTTAGGAGAGATCTTAGACTTGAGGACAATCCTGCCTTAGCTGCTGCTGCTAAGGATGGTTGTGTTCTTCCAGTCTATATCTGGTGTCCTAAAGAAGAAGGGCAATTCTACCCAGGCCGAGTCTCGAGATGGTGGCTTAAACAGTCTCTAACTCACTTGCAGCAGTCATTGAAATCGCTCGGTGCTCAGCTGGTTCCAATGAAAACAGATAGTACTTATTCTGCCCTGTTAGATTGTATCAATGCCATTGGGGCAAACAAAGTAGTATTTAACCGCCTTTACGATCCTGTTTCGGTTGTTCGAGACCACAACATTAAACAAAAACTAGCAGAACTCGGTATCTCTATGGAAACCTACAATGCAGATCTACTGTATGAACCATGGGAAGTTTATGATGAAAAAGGGCATGCCTTTACGACCTTCGATGCATTTTGGGAAAGATGCTTGTCGATGCAGAAGGAACCTGGTTCGAGTCTTCCTCCATTGAAATTGGTTCCGGCTGAAGGGGAGTTGAAAGAATGTTCAGTTGAGGGACTGGGTCTCGAAGATGAGTCGGAAAAATCTAGTAATGACTTACTGAGCAGAGCTTGGTCTCCGGGTTGGAGCAAGGCCGATAAGGCTCTCACAGGATTTGTGGAACATCATTTGCATGAGTATTCGAAGAATAGGCTGGAAGTTGGAGCGAGCTCCACCTCACTTTTATCTCCTTATCTTCACTTTGGAGAAGTGTCCGTCAGAAAAATTTATCAGATGGTGAGAATGAAGCAAATATTATGGATAAGAGAAGGAAACTCGGAAGCTGAAGAGAGTGTGGCTCTTTATCTCAGGGCAATTGGGCTTAGAGAATATTCAAGATACTTATGCTTCAACTTCCCTTTCACACATGAGAGATCACTATTGAGTAACTTAAAATTTTTTCCTTGGGATGCCAATCAAACGCGTTTTAAGACTTGGAGACAGGGTCGGACGGGATACCCGTTAGTCGATGCCGGGATGAGAGAGCTATGGGCTACTGGTTGGATACACAACAAAATAAGAGTCATTGTCTCTAGTTTTGCAGTGAAAGTTTTGCTTCTTCCATGGAAATGGGGTATGAAGTATTTTTGGGACACCCTTTTGGATGCTGATTTGGAAAGTGATATTCTTGGTTGGCAGTATATTTCGGGTAGCTTACCAGATGGCCACGAGCTCGATCGACTGGACAGTCCCCAGATTCAAGGCTCCAAACTTGATCCCGAAGGAGAATACGTAAGGCACTGGCTACCCGAACTAGCTCGATTGCCCACTGAGTGGATTCATCATCCTTGGGAGGCACCTCCTTCCTTGCTTAAAGCTTCTGGGGTGGAGCTGGGTATAAACTATCCAAATCCCATTATTGATATTGATTTGGCTAGACAGAATTTGACAGAAGCTAAATTCAAAATGTGGGCAAAAGCTGCACACTCAAATGCTATGACGGAAACTGTCGTGGATAATTCGGACAGCTTTGAAAATCGAGCTATTCCAAAGGTTATTTTGAAGGAAAAGATGTGTCCTTCGAATTCATCTAACGATCAAAGGGTGCCGAGCTTTCGGAACATTGGGAAAAGTAGTGTTACACGGAAGCGCACGAAAGCTTTGGAGGAAGAAAAGATGAATGAAATACCAAGAATGGAGGAAGATTTACGCTCTACTGCAGAATCTTCATCGGCCAAGAAACAAACAACCTCGAGGACTTCATTTGCTGTTCCTCAATCTTCGTCATCAAAAGAGCATATCTTCTCAGACTGCGAATCGTCTGACTTGAAGGAATGTACTCGGCCATGGATGGACAGAGAACGAACTCCAGAGAAAGACGGTAAGGCACCTTCCATAATTAGATTTATTAAAAATTCAATTTTCTTCAGTTCGCTGATCATTTTGTTAGAAGATTAA 1944 43.16 MGSGNKTIIWFRRDLRLEDNPALAAAAKDGCVLPVYIWCPKEEGQFYPGRVSRWWLKQSLTHLQQSLKSLGAQLVPMKTDSTYSALLDCINAIGANKVVFNRLYDPVSVVRDHNIKQKLAELGISMETYNADLLYEPWEVYDEKGHAFTTFDAFWERCLSMQKEPGSSLPPLKLVPAEGELKECSVEGLGLEDESEKSSNDLLSRAWSPGWSKADKALTGFVEHHLHEYSKNRLEVGASSTSLLSPYLHFGEVSVRKIYQMVRMKQILWIREGNSEAEESVALYLRAIGLREYSRYLCFNFPFTHERSLLSNLKFFPWDANQTRFKTWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKVLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPQIQGSKLDPEGEYVRHWLPELARLPTEWIHHPWEAPPSLLKASGVELGINYPNPIIDIDLARQNLTEAKFKMWAKAAHSNAMTETVVDNSDSFENRAIPKVILKEKMCPSNSSNDQRVPSFRNIGKSSVTRKRTKALEEEKMNEIPRMEEDLRSTAESSSAKKQTTSRTSFAVPQSSSSKEHIFSDCESSDLKECTRPWMDRERTPEKDGKAPSIIRFIKNSIFFSSLIILLED 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12798137 12801621 + Bpe010261.1 Bpe13g00558 113338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00558 647 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 481 IPR014134 GO:0009785|GO:0009882
Bpe13g00558 647 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Bpe13g00558 647 PANTHER CRYPTOCHROME 2B APOPROTEIN 5 553 - -
Bpe13g00558 647 PANTHER CRYPTOCHROME 5 553 IPR002081 -
Bpe13g00558 647 MobiDBLite consensus disorder prediction 521 540 - -
Bpe13g00558 647 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Bpe13g00558 647 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
Bpe13g00558 647 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Bpe13g00558 647 MobiDBLite consensus disorder prediction 544 570 - -
Bpe13g00558 647 PRINTS DNA photolyase signature 333 349 IPR002081 -
Bpe13g00558 647 PRINTS DNA photolyase signature 353 371 IPR002081 -
Bpe13g00558 647 Gene3D - 134 294 - -
Bpe13g00558 647 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 486 IPR036134 -
Bpe13g00558 647 MobiDBLite consensus disorder prediction 521 590 - -
Bpe13g00558 647 Pfam FAD binding domain of DNA photolyase 284 480 IPR005101 -
Bpe13g00558 647 MobiDBLite consensus disorder prediction 571 590 - -
Bpe13g00558 647 Pfam DNA photolyase 8 163 IPR006050 -
Bpe13g00558 647 Gene3D HUPs 8 207 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00558 K12119 CRY2; cryptochrome 2 - tcc:18603214 939.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00558 Bpe14g01253 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00107 Bpe-Chr2:783960 Bpe13g00558 Bpe-Chr13:12798137 0 dispersed
Bpe04g00446 Bpe-Chr4:2869817 Bpe13g00558 Bpe-Chr13:12798137 0 dispersed
Bpe10g00618 Bpe-Chr10:12986116 Bpe13g00558 Bpe-Chr13:12798137 2.12E-45 dispersed
Bpe11g00147 Bpe-Chr11:1035677 Bpe13g00558 Bpe-Chr13:12798137 2.38E-10 dispersed
Bpe13g00558 Bpe-Chr13:12798137 Bpe14g01253 Bpe-Chr14:9473216 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00558 Bpe_Chr13 FPKM 0.854839 0.788073 0.449574 1.396193 1.520262 0.176805 0.720056 1.816901 0.862575 0.845018