Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00570 GAGTTGAATATGGCTGGGATCGTGATTGAGGAGCCTGTTGGAAGGTCTATTGAGGGAATTTCAAGTGGACTCCGAAGTCAATCTGGAGAGACATTAGCAGAATGGCGGTCCTCTGAGCAATTGGAAAATGGAACTCCTTCAACGTCGCCCCCTTATTGGGACTCTGATGAGGATGATGATAGTGGACCAAAACCTTCAGAGTTATATGGAAAATATACTTGGAAAATAGAGAAGTTTTCTCAGCTTAACAAAAGAGAACTCCGGAGTAATGCATTTGAGGTTGGTGGTTACAAATGGTATATTTTAATATATCCTCAAGGTTGTGATGTATGCAACCATCTCTCTTTGTTTCTGTGTGTTGCAAATCATGACAAACTTCTGCCAGGTTGGAGCCATTTTGCACAGTTTACCATAGCTGTGGTGAATAAAGATCCAAAAAAATCAAAATATTCTGACACATTACATAGGTTTTGGAAGAAAGAACATGACTGGGGATGGAAGAAGTTCATGGAGCTGTCTAAAGTGTTAGATGGGTTCGTTGATGCTGACACTCTAATAATAAAGGCTCAAGTTCAAGTGATTAGGGAAAGAGCGGAACAACCATTTCGTTGCCTGGATTATCAATATCGGAGAGAACTTGTTCGGGTGTATTTGACTAATGTCGAGCAAATTTGCCGGCGCTTTGTGGAAGAGAGAAGAAGCAAACTTACGAAGTTGATAGAGGATAAAAATAGGTGGTTGAGTTTCTGTACCTTCTGGTTGGGAATTGACCAAAGTGCTAGACGCCGTATGTCTAGGGAGAAGACAGATGTGATTCTAAAAGTGGTTGTAAAGCATTTCTTTATAGAGAAGGAAGTCACGTCTACTTTAGTGATGGACTCCTTGTATAGTGGGCTGAGGGCTCTTGAAGGCCAGACAAAGAACAAGAAAGTGGGGGCAAAACTGTTGGAAGCTGAAGAAATGCCAGTCCCAATTGTTCGCATAGAAAAAGATATGTTTGTTTTAGTAGATGATGTTTTATTACTACTTGAGAGAGCTGCTTTGGAACCATTGCCTCCTAAGGATGAGAAGGGACCTCAGAACCGTACAAAGGAAGGTAGCTCTGGAGAGGATTTCAACAAAGATTCTATTGAACGCGATGAAAGGCGTCTTACTGAATTGGGACGTAGAACTGTGGAAATATTTGTTCTTGCTCATATATACAGCAATAAAGTTGAGGTCGCTTATCAGGAAGCTGTTGCATTGAAGAGGCAAGAAGAGTTGATCCGTGAAGAAGAGGCAGCATGGCAGGCAGAAAGTGAACAAAAGGCAAGGCGTGGTGGAACAGAAAAAGAAAAGAAAGCAAAGAAAAAACAGGCTAAACAAAAACAAAACAATCGAAAAGGAAGGGAAAAGGGGAGAGAAGAGAGGATAATACTATACAGGCATGAGAAAGAAACTCTGAGTGATATGAAGAAGGTCACGAATGTGGAGGAGATGCAGCCTGTGCTTGAAAAGCCTGATATGCTGGAAGATGTTTCTGATGTGTCAGATTCAGTGGATGCTGTTGGCGAAGCACTTCATCCTGATTCAGAAGATAGAGAGACTAGTCCTGTTAATTGGGAAACTGACACATCAGAAATTCATCCTCCCATGGACTCAAGTAGGAGCGTAATTAGCAGCTTGTCTTCTGCACAGACTGTGTCATCTGACAAGAAGAACGCTTCCATGATGGATGATAGCTCCTCAACATGTTCTACAGACTCAGTTCCATCAGAGGTAATGAATGGGTCTTACAAAGGCAGCTCCTTCCCTAATTACAAGAACCAAAAAACTCCTACCAGAAGAAAGAGCCAACAAGGTAATGTAACCTCTGACAAGACTATATGGGGAAATGAGACTGATAGTCAACCATCTGGGCCTTCACCTGATACAGGGGATCAAAGTGATGTGTCCGAAACTAGTAAGCCTGGTGAATCTGAACCTGAGGCTGTTGTTGTTTCCCTCTCCCATCAGGATCACTTAAGGGGAATTGAACAAGAAATGGCTAAGAAGGAGAAAGGGATGGTAGCAGCTCAGTGGAAACAATGCCCTAAAAACCAGGTTGATACTGAAAGAACCCTGAAAGATAAAACGTCAGTTGTAACATCCTCTGTTCAGAATACACAGATACATCTTCCTACATCTTCTGAGCAGAAGTCTGAGCATCGGAGTAGTGCTTATATTCAAAAGACGACTTCAAATGGATCACATTCAAGGGCTGCTCCAGCAGTTACTTCACCCCCTTTAGTAGGTGCATCGAAAAGTGAGGCTCAAAAGACTTTAACCCCAAAAATAACTGAAAAAGCTATGGTACAACAAGTTAATATAATGTCTAGACCTTCTAGTGCTCCTCTAATTCCTGCTCTGAGGCATCCAGCTCCTGTTGTTTCTGTGGCTCAAACAACCCAGCCCCTCTCCCGTTCTGCAAGTGCAGCTGGCCGGTTGGGTCCTGACCCATTACCTGCTACCCATAGTTATGCACCACCTCAGTCCTACAGAAATGCCATAATGGGTAACAACGTGTCCACTAGTACTACTGGTTTTACTCAGCCCAGCTCTTCGCCTCCTGGAGTAAACCTGTCCCCATTATTCTCACATACTACGGCCTTGGTATCTCCCCCAATGTTTTCGTCGCAAAATTCTGACAGGTTGGATTCAAATCCAGTTAAATCAAGTTTTCCTCGCGGCATGGTAAGTAGGGATGTCTTACCAAATGTTCTGCAATGGACGGATGGCTCTCAAATGGATGGCAGGAGTGTTCAGTTTAATAATAGCTCATCGTTGAATGATGTTCAGAATCTGGAATTTTACCCTCGACTACATGGTGGAAACCGTGAGCAATTGTTAGCTGATTTCTCTGCCTGTACATCTGGGCGGCAGGGCCAAGGTTTGGCGGAGGAATTTCCCCACCTTGATATCATCAATGACCTACTGGATGAAGAGCAGTGTGTGGGGAAAGCAGCTAGGTCAAGCTCAATATTTCCATCTTTCACCAATGGACCAACCTTGCTGAATAGGCAGTTTTCTCTTCCTGGCGATGTAGGCCTATCTGGTGATGTTGGTTCATCAACCAGCACTTGCAGGTTCGAACGGACACATAGTTATCATGATGGAGGATTTCGACAAGGGTACAGCTCTTCAATTGGGCATTTTGAGCCAGTTATGGATTATATGCCACCAGTGAGTACACTATCTTATGTCAATGGTCAGATTGATGGGATTATTTCCAGTCAGTGGCAGATCAATTCGGATCCATCTTTGCTCCGGTCCATGAACTCAAAATACGAACCTTACCCATATCTCAATCCAGAGTATTCAAATATGGCATGCAGAATAAACGGCTGCAATGTCTTCCGGCCATCAAATGGGAACTGA 3396 43.35 ELNMAGIVIEEPVGRSIEGISSGLRSQSGETLAEWRSSEQLENGTPSTSPPYWDSDEDDDSGPKPSELYGKYTWKIEKFSQLNKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVLDGFVDADTLIIKAQVQVIRERAEQPFRCLDYQYRRELVRVYLTNVEQICRRFVEERRSKLTKLIEDKNRWLSFCTFWLGIDQSARRRMSREKTDVILKVVVKHFFIEKEVTSTLVMDSLYSGLRALEGQTKNKKVGAKLLEAEEMPVPIVRIEKDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKEGSSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIYSNKVEVAYQEAVALKRQEELIREEEAAWQAESEQKARRGGTEKEKKAKKKQAKQKQNNRKGREKGREERIILYRHEKETLSDMKKVTNVEEMQPVLEKPDMLEDVSDVSDSVDAVGEALHPDSEDRETSPVNWETDTSEIHPPMDSSRSVISSLSSAQTVSSDKKNASMMDDSSSTCSTDSVPSEVMNGSYKGSSFPNYKNQKTPTRRKSQQGNVTSDKTIWGNETDSQPSGPSPDTGDQSDVSETSKPGESEPEAVVVSLSHQDHLRGIEQEMAKKEKGMVAAQWKQCPKNQVDTERTLKDKTSVVTSSVQNTQIHLPTSSEQKSEHRSSAYIQKTTSNGSHSRAAPAVTSPPLVGASKSEAQKTLTPKITEKAMVQQVNIMSRPSSAPLIPALRHPAPVVSVAQTTQPLSRSASAAGRLGPDPLPATHSYAPPQSYRNAIMGNNVSTSTTGFTQPSSSPPGVNLSPLFSHTTALVSPPMFSSQNSDRLDSNPVKSSFPRGMVSRDVLPNVLQWTDGSQMDGRSVQFNNSSSLNDVQNLEFYPRLHGGNREQLLADFSACTSGRQGQGLAEEFPHLDIINDLLDEEQCVGKAARSSSIFPSFTNGPTLLNRQFSLPGDVGLSGDVGSSTSTCRFERTHSYHDGGFRQGYSSSIGHFEPVMDYMPPVSTLSYVNGQIDGIISSQWQINSDPSLLRSMNSKYEPYPYLNPEYSNMACRINGCNVFRPSNGN 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12879792 12888561 + Bpe010273.1 Bpe13g00570 113350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00570 1131 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 4 1130 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 811 866 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 519 533 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 834 866 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 35 66 - -
Bpe13g00570 1131 Pfam MATH domain 76 193 IPR002083 GO:0005515
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 428 448 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 695 764 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 882 903 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 519 660 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 428 471 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 351 377 - -
Bpe13g00570 1131 ProSiteProfiles MATH/TRAF domain profile. 69 191 IPR002083 GO:0005515
Bpe13g00570 1131 SMART math_3 71 175 IPR002083 GO:0005515
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 704 748 - -
Bpe13g00570 1131 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 54 198 IPR008974 GO:0005515
Bpe13g00570 1131 PANTHER MEPRIN AND TRAF (MATH)-LIKE DOMAIN PROTEIN 4 1130 - -
Bpe13g00570 1131 SUPERFAMILY TRAF domain-like 70 196 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 534 648 - -
Bpe13g00570 1131 MobiDBLite consensus disorder prediction 35 52 - -
Bpe13g00570 1131 CDD MATH 70 192 IPR002083 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00570 - - - csv:101215413 1407.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00570 Bpe14g01234 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01433 Bpe-Chr4:20979799 Bpe13g00570 Bpe-Chr13:12879792 7.03E-26 dispersed
Bpe13g00570 Bpe-Chr13:12879792 Bpe14g01234 Bpe-Chr14:9260101 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g630 . . . . . Bpe14g01234 . . . . . Cma14g01788 Car06g01154 Car14g01608 . Cpe08g00316 Cpe03g01496 . . . . . . . . . . . . . . . Cone15ag0145 Cone7ag0302 Cone4ag0302 Lsi05g01689 . . Cme06g00531 Blo02g00618 Blo07g00248 Bda11g00616 Bda13g00083 . Bpe13g00570 Bma02g00802 Bma06g01587 . Cmo06g01350 Cmo14g01824 . . . . . . . . . . . . . Cla05g00474 Cam05g0515 Cec05g0529 Cco05g0529 Clacu05g0516 Cmu05g0490 Cre05g0556 . Csa03g01250 Chy06g00504 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003455 2 0 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 3 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00570 Bpe_Chr13 FPKM 14.037872 13.233184 12.943034 11.478786 13.948539 14.139968 13.879054 21.191711 22.113571 21.014439