Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00592 ATGGATATGAAAGTGAATGTGATGATAAAACTTATCGAAGAAGATGCCGATTCTTTTGCAAGGAGGGCAGAAATGTACTACAAGAAAAGGCCAGAGCTGATGAAATTGTTAGAGGAAATATACCGAGCTTATCGAGCGCTGGCGGAAAGATACGATTATGCGACTGTGGAGCTTCGTCAAGCCCATCGGACAATGGCGGAGGCATTTCCAAACCAAGTCCCTTATGATCTGATCGACGAATCGCCCTCAGAAACTTCTGTTTCTGGACCCGAAGAACCTCATACTCTCGAAGTGTCACATCCAATGCGGACACTATCAAACCTTGATGACTTGTCAATCAGCTCTCATGGAATTAGCAAAAGGGGTCGTAGACAAGTCGACGAGGATGAATTTTCTCGATTATCGTGTGAAAACCAGAATCTCGAGGGATTTGGCGACTCATCAGAGACCGAAGTTGAATATATGAAAGGACCGTTGACTAAGATAGAAGCTGAGAAAGAATCCATTTTTCTTAAATACCAGCAGGCTTTAGAAAAATCATCAAATCTGGAGGCCGCACTTGAAAACGCGCAACAAGAGGCTGCAGGGCTTAATCAACGAGCAAGCGAGTCTGAAATCGAGGTCAAAATATTGAAGGAAGCTCTTTCTGGAATGGAGGCAGAAAGGGATGCTAATCTTCTCCGATATAATCAGTCTTTGGAAAGTATATCTAATCTGGAGAATCTACTGTTTCTTTCTGAGGAAGAAGCTAAAGCACTTGATTTGAGAGCCGGCAAAGCAAAAACCGAAACTCAATATCTCAGATTACAACTTTCAAGTTCAGAGTATGAAAAGGAAGCCAGTCTTCGACAGTACAAGCAATGTCTCGAGAAGATATCTCTCATGGAGGCTAAGATTTCTGCGGCTGAGGAAAATTCGAGGGTACTAAATGAGCATGTAGAAAGAGCCGAATCTGAAGTAAATTCGTTAAAGGAGACGATAGTGAAGATGGAGAGTGAAATTTCTTGGGCTCGAAACAATGCAAAAAAACTAAATGACGAGCTCCTGACAGTCTCAAATAAGTTAGACAGTGTGGAAGTGAAGTATTCTAAATTGGAGGACTCAAATCGAGCCCTGCAATTAGAGGCGAACAATCTGATGGAGAAGATAACAATGAAAGATCAAGAACTTGCTCAAAGACAAGTTGAATTTGAGAAATTTCAGATCCAAATGCACGAAGAACAGTTGCGGTTTAAGCAAGTTGAAACCAGTCTTCACACATTACAGGACTTGTATTCTCTATCTCAAGATGAGCAGAAAGCTCTTACCCTGGAGCTTAAAAATGGTCTTCGGACGTTGAAGGATTTGAGCATACACAAACTTAGTGTGGAGGAAGAGCTTCAAAAGATTAAGGAAGAGAATAGGAGCCTGAAGAATCTAAAGAATGAAATTTTAAGCTTGAAGCAGATAAAACACAAACTTGAAGAAGAAGTATCTCACAAAGTAGATTATAGCAACGCACTAGAGCGGGAAATTCACTGTTTGAGAGAAGAAATTAAGGGCATGAATGGAAGATACCAGGCCATAATGATGGAGGTTGAATCCGTAGGTATAAATCCTGAAAGCCTCTTATCTTCTGTAAAGGAATTGCAAAATGAGAATGCAAGGCTTAGAGACACCTTCGAGACAGAGCGTATCAAAGGAGAAGTTCTTTCTGCTAAGTTGAATTGTACGGAGAAAATTTTGAAAGATAATGTGATTCTCGAGGTTTCTTTAGCAGAAATGAATGAAGAGTTGGAAAAGATGAGGGTGAAGTCGAAGGACTTCCAAGAGTCATGCCATTTCCTTCAGGAAGAGAAAACCAGTCTTGTTGCTGAAAAGGCCAACTTGCTGATGCAGCTGCAGATTGTAACAGAAGATATGCAGAAGCTCTTGGAGAAGAACACCTTACTGGAGAATTCCTTGTGTGGTTCAAACATTGAGCTTGAAGCTTTGAGGGATCATTCTAAGAGCTTAGAAGAAGTCTGCCAGTTACTGAAGAGTGAGAAATCTAATCTTGTCAGCGAAAGAGATGAATTGCTATCTCAATTGGCAAATGTTGAACTGGGGCTCGGAACTCTCGAAAAGAAATTTTCAAATCTCGAAGGTAAGTATATTTCCTTGGAAAATGAAAACGAGATGACAATTGATCACGTCGAAGAATTGAGGTCATCCATTGTTGCCGAGAAAGAAGAGCGGGCAAGTTACAAGACATTAAATGAAACGAGAATGTCTGGTTTGGAAACTGATATTCATATTCTACAACAAAAAAGTAGACTGGGGAAGAAAGAATTTGAAGAAAAACTAGAGAAGGCGGTAAATGTTCAGGTAGAGAGCTTCATTCTCCGAACATTTGTCGAAGATTTGGAGGCGAATAATTGTTCGCTAATAATCGAAAGTCAAAAACTTAATGAGGCGTCCAAATTTTCAAATAAGCTGATCGCGGAGTTGGAACTGGAAAATCTTGAGCAGCAGGTGGAAATAGAATTCTTGGTGGATGAAATCGAAAACTTACGAAGGGGGATTCATAGATTGTTCAAAGCTGTTCAAATCAGTCCGGAGTATGGACAAAAAGATGAGATTGAAAGAGAAAACTTTCTTTTATTGAAGATTTTGGACACAGTTGAGGAATTGAAAACTTGTTTGTGCAGAAACAAAGATGAGAAACAGCAACTTCTGATTGAGAACTCAGTCCTCTTGACTCTTCTTGGGCAACTCGGACTAGAGGGCGAAGAACTTCAGAGACAGAGAAATTATCTCGAGAATGAGTTCAAAATCCTGAAAGAAGAGCTGGGTTTGAATGAAAAAGAGAAATACGATCTGCAAGAGATGACAAGGCAATTGATGTTTGAAGCTACCCAGAAAGAGCAGCATGAAAAATTCCTGGCCGGCAAAATCCAAATGCAAAATCTCAAGTTGGAAAATTTGAGGAGAGATTACCTGTTTCTACAGAAAGAAAATTCAGATTTGATTAAAGAAAAGAGGTCCGAGTTAGAGAAGTTTTCAGACCTCAAAGATGCATATTATGCTCTTGAAGAAGAAAATAAAATAAATATCGAAGGTGTTGCACTTGACATATTCTCGTTAGTTTTTGAAAGCTTCATGGCAGGGAAAGCTATGGAAATGAAAGCTCTCAGCGAAGATCTCGATTGTCTCCATCTGGCTAATAGTGATCTAAAGGATAAGGTGGAGGAGATGGCCGAAACATTGGTAATGAAAGAGGCGGAAATTCTCCGACTGAATGAGTTGGTCGAGAAGTTAGATGATGAGATGCATGAAGTGAAAAAGCACAATGATCTACTAATACATGAAATTGTGCTTGGAAATAATTTTCTGAGACAGAAAGTAGAAGGGCTTTCAGAAACCGAACAAGAGTTGAAGGATTCACAGGAATTAAATGCCAAACTGTGCAATAGAGTTGAGGAATTGAAGATGGAATGTAAAGAATTGACATTAATTCGAGAAAATCTAGAGATTGAGAATCTTCAACTTTGTATGGATGGCCACCGGCAGAACGAAGAAATCAATTGGCTTTTTGAAATGAATGAAAATTTTAAATCGGAGGTAGATCTGTTGTATAATGAAGTCGAAGAATGCAGGATTAGAGAGGATAACCTAGGATCTGAGCTTCAAGAGAGAAAAGCCGGGTTCGAACTTTCGGAAGCTGAAGCTGCTTCGGTTTATTACGATCTTCAAGCCTCCGCTGTTCGTGAGGTTTTTCTTGAAAATAAGCTTCATGAAATTACTCGAGTATGTGAGATGATTGGAAGTGAAAGTGCTGCAAAAGATATGGAGATTCAAAGTCTAAGAGAAAGTTATCGGATCCTGGAAAGTGAAATTGGAAGGTTAAAACTCGAGTTTTCTGCAACTTATTTGAAAAAGAACGTGGAACTAAAGTCAAACACGAATGTTGAAGTAAGAGTTTCAATGAAAGACGGAGAAGTGTCCGAATCGGAGGGGATTTCACATTTAGAGATCGCAAGAAATGGAAGGATGGCCCTTCGGAATGAGTTCGATCAAATTTTGAAGCAGCATACAAAAAGATCGGGACATGGGACGCAAATGAAAGACATCCCTCTGGATCAAGTCGCTGGTTTTTCAATCTATGGACGGAGTAAAATGGAGAGCCGTGGGGTCAATGACCAAATGCTACAATTGTGGGAAACAACGGAACCAAAAACCGACCAGAGTCTAATATCCAATGAGGCGCATAACCTGACAATCTTACCTCTCCCGACTAATCAGAACGTTTGCGAGGAACAAAATCGTTCAGGTTCCTCGTCGGACATAGAGAGAGAACCTGTCCTGGTCGATGACAGGTTTGAGAGATCCTCTAGCATCAGAGAACGAAGTCAAGGAGGCAAAAAGAGAAAGATTCTACAGAGGCTGGCCTCGGATGCTCAGAAATTGACGAATCTCCGAACTACAGTTTATGATTTGAACAAGAGAATGGAGACTAAAAACTGGAGCAAGAAGGAAAGCTACATCGAACACGAGAAGGTCTATAAACAGCTGAAAGAATTCGAAGAAACTGTTCTTCAGCTGGTCAAGATGAACGATCAATTGACAAAGAACGCAGAGCAAAGTCCTTCATCTTTGGCCGGAAAAACCGCTTCGGAGTTGGAGATTGAAAACGGCGCCAGAAACAACATGATGGAGCAGACAAGAAAAGCGTCGGAGAAGATTGGAAGGCTGCATTTAGAGGTACAAAACATTCAACTAGTCTTGCTGAAACTGGAAGAAGAGAAAAAAAGAAAATGGAAGACGAGATTTTTGAAGAACAAAACAGGTATCGTACTGAAGGAATTCATTTACAACGGCAAGAAAAGCAGTGAAAAGGACAAGAAGAACAGCATCTGTGGGTGCCAGGGACCTCCAAGGAACGAAGATTGA 4911 40.42 MDMKVNVMIKLIEEDADSFARRAEMYYKKRPELMKLLEEIYRAYRALAERYDYATVELRQAHRTMAEAFPNQVPYDLIDESPSETSVSGPEEPHTLEVSHPMRTLSNLDDLSISSHGISKRGRRQVDEDEFSRLSCENQNLEGFGDSSETEVEYMKGPLTKIEAEKESIFLKYQQALEKSSNLEAALENAQQEAAGLNQRASESEIEVKILKEALSGMEAERDANLLRYNQSLESISNLENLLFLSEEEAKALDLRAGKAKTETQYLRLQLSSSEYEKEASLRQYKQCLEKISLMEAKISAAEENSRVLNEHVERAESEVNSLKETIVKMESEISWARNNAKKLNDELLTVSNKLDSVEVKYSKLEDSNRALQLEANNLMEKITMKDQELAQRQVEFEKFQIQMHEEQLRFKQVETSLHTLQDLYSLSQDEQKALTLELKNGLRTLKDLSIHKLSVEEELQKIKEENRSLKNLKNEILSLKQIKHKLEEEVSHKVDYSNALEREIHCLREEIKGMNGRYQAIMMEVESVGINPESLLSSVKELQNENARLRDTFETERIKGEVLSAKLNCTEKILKDNVILEVSLAEMNEELEKMRVKSKDFQESCHFLQEEKTSLVAEKANLLMQLQIVTEDMQKLLEKNTLLENSLCGSNIELEALRDHSKSLEEVCQLLKSEKSNLVSERDELLSQLANVELGLGTLEKKFSNLEGKYISLENENEMTIDHVEELRSSIVAEKEERASYKTLNETRMSGLETDIHILQQKSRLGKKEFEEKLEKAVNVQVESFILRTFVEDLEANNCSLIIESQKLNEASKFSNKLIAELELENLEQQVEIEFLVDEIENLRRGIHRLFKAVQISPEYGQKDEIERENFLLLKILDTVEELKTCLCRNKDEKQQLLIENSVLLTLLGQLGLEGEELQRQRNYLENEFKILKEELGLNEKEKYDLQEMTRQLMFEATQKEQHEKFLAGKIQMQNLKLENLRRDYLFLQKENSDLIKEKRSELEKFSDLKDAYYALEEENKINIEGVALDIFSLVFESFMAGKAMEMKALSEDLDCLHLANSDLKDKVEEMAETLVMKEAEILRLNELVEKLDDEMHEVKKHNDLLIHEIVLGNNFLRQKVEGLSETEQELKDSQELNAKLCNRVEELKMECKELTLIRENLEIENLQLCMDGHRQNEEINWLFEMNENFKSEVDLLYNEVEECRIREDNLGSELQERKAGFELSEAEAASVYYDLQASAVREVFLENKLHEITRVCEMIGSESAAKDMEIQSLRESYRILESEIGRLKLEFSATYLKKNVELKSNTNVEVRVSMKDGEVSESEGISHLEIARNGRMALRNEFDQILKQHTKRSGHGTQMKDIPLDQVAGFSIYGRSKMESRGVNDQMLQLWETTEPKTDQSLISNEAHNLTILPLPTNQNVCEEQNRSGSSSDIEREPVLVDDRFERSSSIRERSQGGKKRKILQRLASDAQKLTNLRTTVYDLNKRMETKNWSKKESYIEHEKVYKQLKEFEETVLQLVKMNDQLTKNAEQSPSSLAGKTASELEIENGARNNMMEQTRKASEKIGRLHLEVQNIQLVLLKLEEEKKRKWKTRFLKNKTGIVLKEFIYNGKKSSEKDKKNSICGCQGPPRNED 1636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13028297 13033207 - Bpe010295.1 Bpe13g00592 113372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00592 1636 Coils Coil 655 689 - -
Bpe13g00592 1636 Coils Coil 697 717 - -
Bpe13g00592 1636 Coils Coil 1272 1292 - -
Bpe13g00592 1636 Coils Coil 540 560 - -
Bpe13g00592 1636 SUPERFAMILY Tropomyosin 136 397 - -
Bpe13g00592 1636 Coils Coil 820 840 - -
Bpe13g00592 1636 MobiDBLite consensus disorder prediction 1615 1636 - -
Bpe13g00592 1636 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 127 - -
Bpe13g00592 1636 Coils Coil 173 221 - -
Bpe13g00592 1636 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 1 58 IPR011684 GO:0003779
Bpe13g00592 1636 MobiDBLite consensus disorder prediction 116 131 - -
Bpe13g00592 1636 Coils Coil 498 518 - -
Bpe13g00592 1636 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 127 1295 - -
Bpe13g00592 1636 Coils Coil 972 999 - -
Bpe13g00592 1636 PANTHER PROTEIN NETWORKED 4A 1303 1635 - -
Bpe13g00592 1636 Coils Coil 1048 1106 - -
Bpe13g00592 1636 Coils Coil 446 490 - -
Bpe13g00592 1636 MobiDBLite consensus disorder prediction 79 131 - -
Bpe13g00592 1636 MobiDBLite consensus disorder prediction 100 114 - -
Bpe13g00592 1636 Coils Coil 620 647 - -
Bpe13g00592 1636 PANTHER PROTEIN NETWORKED 4A 1 127 - -
Bpe13g00592 1636 PANTHER PROTEIN NETWORKED 4A 127 1295 - -
Bpe13g00592 1636 Coils Coil 285 389 - -
Bpe13g00592 1636 Coils Coil 1511 1531 - -
Bpe13g00592 1636 Coils Coil 916 936 - -
Bpe13g00592 1636 Pfam KIP1-like protein 1 52 IPR011684 GO:0003779
Bpe13g00592 1636 Coils Coil 1115 1166 - -
Bpe13g00592 1636 Coils Coil 1188 1208 - -
Bpe13g00592 1636 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1303 1635 - -
Bpe13g00592 1636 Coils Coil 578 605 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00592 - - - qsu:111998448 1434.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00592 Bpe14g01206 CCT
Bpe13g00592 Bpe14g01206 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g01060 Bpe-Chr7:16057879 Bpe13g00592 Bpe-Chr13:13028297 2.67E-09 dispersed
Bpe13g00592 Bpe-Chr13:13028297 Bpe15g00262 Bpe-Chr15:13969558 4.98E-24 dispersed
Bpe13g00592 Bpe-Chr13:13028297 Bpe14g01206 Bpe-Chr14:9002852 0 wgd
Bpe13g00592 Bpe-Chr13:13028297 Bpe06g00454 Bpe-Chr6:15919114 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00592 Bpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0