Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00595 ATGGCGGCAACTCTCCCCCTCTGTCCTCCACTCTCGTCCCCTCCAATCTCCGTCGCCCCAACTCACCAATCCGACCCGAAAATTGGAGGCATCTCTAAGGATTCTTCCCGAATTGGGTTGCTCAAAAAATGCAAAACCATGAACGAAGTCAAGCAATTGCAGGGTCAGCTGATAAAGCAGGGCCTCAGCCATAGACTATCTGTGGTCACGCGGGTGATTGAAGATTACGCAGAAATGGGCACCACCGAGAGCTTATCATTTGCTTGGAAAGCCTTCCACCTCTTCCGGGAAGGCGGCGGAAGAAACGTCACTCTGTTCATGTACAATTGTCTAATCAGAGGCTATTCCTCTGCTGGGCTAAGCGACGAAGCTATTTCGCTTTACATTGAGATGCTGGGTGCTGCCATTTTTCCAGACAACTTCACTTTTCCATTTGTGTTGAGCGGGTGTGCTAAGGAGGCGTTGTTTCTCGAAGGCGCTCAGTTCCATGGGGCCATTTTCAAGATGGATTTGGAGGAAGACGTTTTTATCAGAAACTCCCTCATACATTTATACGCCGAGTGTGGGGAGATTGGCCTTGCACGAAAGGTGTTCGACAAAATGCTCGACAGAAACGTTGTTTCTTGGACTAGTTTGATTTGTGGCTATGCTCGGTTGGATGATCCAAAAGAGGCTGTTTCTTTGTTTTTCGAAATGGTTGACGTTGGAATCGTACCGAATTCTGTAACAATGGTGTGCGTAATTTCTGCCTGCGCTAAGTTGAAGGATCTTGAGTTGGGTGAGAGGGTGTGTTCGTATCTTAACAAGTCAGGGCTTAAACTTAATATTCAAATGGTGAATGCGCTTGTCGATATGTACATGAAATGTGGAGCGATTGACGTTGCAAAGCGGCTTTTCGACGAATGTGTGGATCAAGATTTAGTTTTATGCAACACAATCATGTCAAATTACGCTCGCATTGGATTGCCAGAGGAAGCCCTTGCCATATTGGTAGAGATGGTTCAATCGGGTACCCGACCAGATAAAGTGACGATGCTGTCTGCAATCTCTTCCAGTGCTCAATCAAATAATTATCTCTTTGGAAGGTGGTGCCACAGCTACGTTCTGAGAAACGGATTAGAAGCTTGGGATAACATTTGTAACGCCATGATCGACATGTACATGAAGTGTGGAAAACCGGAAATGGCTTGCAGAGTTTTTGACAGTTTGTCAAGTCGAACGGTCATCGCCTTCAACTCACTGATAGCAGGCTTTATCAGAAATGGTGACCTCGTGTCAGCTAGGAGAATGTTCGTTGAGATGCCCAAAAGCGATATCGTGTCATGGAACACCATGATAAGTGCTCTTGTCCGAGAGAGTATGTTCACGGGAGCAATTGAGTTATTCCGAGTTATGCAGAGTGAAGGGTTGAAAGCTGACAAAGTGACGATGGTGGAGATAGCATCTTCTTGCGGATATCTCGGAGCTTTGGATCTCGCTAAGTGGACATATACATATATAAAAAAGAACAGGATCGAATGTGATTTGCTTCTTGGCACTGCCTTAGTGGATATGTTCGTTAGATGTGGAGATCCTCAAGACGCACTCGAGGTGTTCAAAACCATGGAAAGAAGAGATGTCTTAGCTTGGACGGCAGCAATCAGAGCGATGGCCATGGAAGGGAATGGAGAACAAGCTGTTTCTCTCTTTAACGAGATGCTCGAAAATGGGGTCAGACCAGATGGCGCAGTTTTTGTTAATGTACTTACAGCTTGTAGCCATGGAGGATTTGTGGAACAAGGAAAAGATGTATTTGCTTCGATGAAGAACCATGGAATAATGCCTACGATTGTACATTATGGATGCATGATCGATTTATTTGGTCGGGCTGGACGATTTGAAGAAGCTCTAAATCTGATAAAGGGCATGCCCATGAAGCCAAATGAGGTGATATGGGGATCTGTTCTAGCTGCATGCAGAACTCATAAAAATGTCGAATTGGCAAGAAACGCAGCTCAAAAGATAACAGAAATGGCTCCCGAAAAGCCAGGAATTCATGTACTTTTATCGAATATATATGCATCGACTGGAGAATGGGCCGATGTTGCAAAAGTGAGGCTGCAATTAAGAGAAAAGGGAGTTCAGAAAGTACCAGGGTCAAGCTCAATCGAGATCTGCGGAAAAATTCATGAATTTACATCTGGGGATGAATCCCACCCAGAAGACAGGCATATTTCATTGATGCTTGAAGAAATGAACCGCAGGGCCAGAGCGTCGGGTTATGTTCCTGATTTGAGTAATGTTCTTGTTGATGTAAATGAGAAGGAGAAAGAGTATTTGCTTAGCAGGCACAGTGAGAAGCTGGCAATTGCTTTTGGTCTCATCAGTACAGATCTTTGCAGGCCTGTTCGAGTCATTAAAAATCTCAGAATTTGTTCTGATTGCCACAAATTTGCCAAATTAATTTCCAAATTATACGATAGAGAAATCATTGTTCGAGATACTAACCGATTTCATTTCTTCCGAGGAGGCTCCTGTACCTGTTCTGATTATTGGTAA 2538 44.41 MAATLPLCPPLSSPPISVAPTHQSDPKIGGISKDSSRIGLLKKCKTMNEVKQLQGQLIKQGLSHRLSVVTRVIEDYAEMGTTESLSFAWKAFHLFREGGGRNVTLFMYNCLIRGYSSAGLSDEAISLYIEMLGAAIFPDNFTFPFVLSGCAKEALFLEGAQFHGAIFKMDLEEDVFIRNSLIHLYAECGEIGLARKVFDKMLDRNVVSWTSLICGYARLDDPKEAVSLFFEMVDVGIVPNSVTMVCVISACAKLKDLELGERVCSYLNKSGLKLNIQMVNALVDMYMKCGAIDVAKRLFDECVDQDLVLCNTIMSNYARIGLPEEALAILVEMVQSGTRPDKVTMLSAISSSAQSNNYLFGRWCHSYVLRNGLEAWDNICNAMIDMYMKCGKPEMACRVFDSLSSRTVIAFNSLIAGFIRNGDLVSARRMFVEMPKSDIVSWNTMISALVRESMFTGAIELFRVMQSEGLKADKVTMVEIASSCGYLGALDLAKWTYTYIKKNRIECDLLLGTALVDMFVRCGDPQDALEVFKTMERRDVLAWTAAIRAMAMEGNGEQAVSLFNEMLENGVRPDGAVFVNVLTACSHGGFVEQGKDVFASMKNHGIMPTIVHYGCMIDLFGRAGRFEEALNLIKGMPMKPNEVIWGSVLAACRTHKNVELARNAAQKITEMAPEKPGIHVLLSNIYASTGEWADVAKVRLQLREKGVQKVPGSSSIEICGKIHEFTSGDESHPEDRHISLMLEEMNRRARASGYVPDLSNVLVDVNEKEKEYLLSRHSEKLAIAFGLISTDLCRPVRVIKNLRICSDCHKFAKLISKLYDREIIVRDTNRFHFFRGGSCTCSDYW 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13056316 13058853 + Bpe010297.1 Bpe13g00595 113375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00595 845 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 73 237 - -
Bpe13g00595 845 Pfam PPR repeat family 106 152 IPR002885 -
Bpe13g00595 845 Pfam PPR repeat family 204 253 IPR002885 -
Bpe13g00595 845 Pfam PPR repeat family 539 585 IPR002885 -
Bpe13g00595 845 Pfam PPR repeat family 438 476 IPR002885 -
Bpe13g00595 845 Gene3D Tetratricopeptide repeat domain 32 164 IPR011990 GO:0005515
Bpe13g00595 845 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 330 819 - -
Bpe13g00595 845 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Bpe13g00595 845 TIGRFAM PPR: pentatricopeptide repeat domain 542 574 IPR002885 -
Bpe13g00595 845 TIGRFAM PPR: pentatricopeptide repeat domain 379 406 IPR002885 -
Bpe13g00595 845 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Bpe13g00595 845 TIGRFAM PPR: pentatricopeptide repeat domain 179 207 IPR002885 -
Bpe13g00595 845 TIGRFAM PPR: pentatricopeptide repeat domain 107 139 IPR002885 -
Bpe13g00595 845 TIGRFAM PPR: pentatricopeptide repeat domain 513 540 IPR002885 -
Bpe13g00595 845 TIGRFAM PPR: pentatricopeptide repeat domain 440 473 IPR002885 -
Bpe13g00595 845 TIGRFAM PPR: pentatricopeptide repeat domain 410 440 IPR002885 -
Bpe13g00595 845 TIGRFAM PPR: pentatricopeptide repeat domain 612 636 IPR002885 -
Bpe13g00595 845 Pfam PPR repeat 380 404 IPR002885 -
Bpe13g00595 845 Pfam PPR repeat 279 303 IPR002885 -
Bpe13g00595 845 Pfam PPR repeat 611 637 IPR002885 -
Bpe13g00595 845 Pfam PPR repeat 308 337 IPR002885 -
Bpe13g00595 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Bpe13g00595 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 609 643 IPR002885 -
Bpe13g00595 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 437 IPR002885 -
Bpe13g00595 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 574 608 IPR002885 -
Bpe13g00595 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Bpe13g00595 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 204 IPR002885 -
Bpe13g00595 845 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 73 237 - -
Bpe13g00595 845 Gene3D Tetratricopeptide repeat domain 165 259 IPR011990 GO:0005515
Bpe13g00595 845 Gene3D Tetratricopeptide repeat domain 365 490 IPR011990 GO:0005515
Bpe13g00595 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Bpe13g00595 845 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 236 336 - -
Bpe13g00595 845 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 330 819 - -
Bpe13g00595 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Bpe13g00595 845 Gene3D Tetratricopeptide repeat domain 260 364 IPR011990 GO:0005515
Bpe13g00595 845 Gene3D Tetratricopeptide repeat domain 512 732 IPR011990 GO:0005515
Bpe13g00595 845 Pfam DYW family of nucleic acid deaminases 753 845 IPR032867 GO:0008270
Bpe13g00595 845 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 236 336 - -
Bpe13g00595 845 Pfam E motif 655 717 IPR046848 -
Bpe13g00595 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00595 - - - zju:107423132 1145.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00667 Bpe-Chr8:7133637 Bpe13g00595 Bpe-Chr13:13056316 1.10E-173 dispersed
Bpe13g00595 Bpe-Chr13:13056316 Bpe04g01944 Bpe-Chr4:24313499 1.71E-174 dispersed
Bpe13g00595 Bpe-Chr13:13056316 Bpe08g00390 Bpe-Chr8:2396749 6.42E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g536 . . . . . . . . . . Cma06g01391 . Car06g01200 . . . . Bhi01g00780 . . . . . . . . . . . . . . . . Cone4ag0258 . . . Cme06g00589 . . . . . Bpe13g00595 . . . Cmo06g01396 . . . . . . . . . . . . . . Cla05g00520 . . . . . . . . Chy06g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013750 0 1 0 0 1 1 2 0 1 1 1 1 1 1 0 1 1 1 0 1 0 0 1 1 1 0 1 1 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00595 Bpe_Chr13 FPKM 10.475512 10.609863 2.165658 2.032006 18.380899 19.70793 18.256495 0.162371 0.0 0.0