Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00600 ATGGAGCCATCGAGGATGATGAAGACGACTCTGATCTTCGTTCTGGTGACGATGCTCTGGGCTGGAGCCGAGTCGCAGTCTTGTACGAACGTGCTAATCAGTCTGTCTCCGTGCTTAAACTACATTACTGGAAACTCTTCGACCCCAACTTCTGGGTGCTGCTCGCAGCTGGCAAGCGTCATTCGGTCACAGCCTCAATGCCTCTGCCAGGTCCTCAACGGCGGCAGTTCGTCGCTCGGGCTCAACATTAACCAAACTCAGGCTCTGGCCCTACCCTCCGCCTGCAATGTTCAGACTCCACCCCTTAGTACTAAGTCTGCTCTAATGGCGAAAAATGGCTCTGTCTGGTCTGCGGAGGAAGGTTGTAGAAGAAGACCGATATCGTCGTTTTTCAGTTGTCCGAAACTATTAACTGGCTTTTCAGTGAAGAGCTTGACGGAAATGGAAACTCAGATGAGTCCGACTTCCATACTCGATACCAAACCATTTTCTTGTTTAATTAATCCTTTCTGGTACGAAACGAAGACCGCCAAAACATCGGCGACCGAAAGTAGACGCCATTGGGACAAGATGGATTCGAAGAGAATAGGCCTCGGCATTGTTGATGATCTTAATGATCTAAGTTTTCCAATGGTTCTGTTCGGTTCGCACCTTAAGATTCGAAGCCCTTCTCTCTACCCTTCACCTCCAGAACCTCCGATATCATCAGCTGATTTTGGCATCAAGACTGAAAGTTCTCGAGAGGGATCCTTTTCGCCGAAAAAATCAATGCCTCCGGCGAAGAAATCGGATTCTGGGTCATCAGATTCCGGCCTGACGCCGACTTCTCGGGCTTTCACCAGGTGTCTCTCTGCTGCTGAAATGGAGCTTTCTGAGGAATATACTTGCGTGATTTCTCATGGACCGAATCCCAGAACTACTCATATATTTGACGACTGCATTGTGGAGAGCTGCACTGGTTTATTCTCTTCTTCTGCGAAGAAGAAGAAGAATAAGGATCGCCATGACAACTTCCTCAGCTTCTGTTTCACTTGCAAGAAGAGTCTTGGGCAAGGAAGAGACATTTACATGTACAGAGGCGAGCAATCATTTTGCAGCGAAGAATGCCGATACCAAGAGATGATCATGGAGGATGAAATCAATAGAGGAGAGCTTGACTAA 1161 47.89 MEPSRMMKTTLIFVLVTMLWAGAESQSCTNVLISLSPCLNYITGNSSTPTSGCCSQLASVIRSQPQCLCQVLNGGSSSLGLNINQTQALALPSACNVQTPPLSTKSALMAKNGSVWSAEEGCRRRPISSFFSCPKLLTGFSVKSLTEMETQMSPTSILDTKPFSCLINPFWYETKTAKTSATESRRHWDKMDSKRIGLGIVDDLNDLSFPMVLFGSHLKIRSPSLYPSPPEPPISSADFGIKTESSREGSFSPKKSMPPAKKSDSGSSDSGLTPTSRAFTRCLSAAEMELSEEYTCVISHGPNPRTTHIFDDCIVESCTGLFSSSAKKKKNKDRHDNFLSFCFTCKKSLGQGRDIYMYRGEQSFCSEECRYQEMIMEDEINRGELD 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13081225 13087413 + Bpe010301.2 Bpe13g00600 113380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00600 386 PANTHER FCS-LIKE ZINC FINGER 8 104 381 - -
Bpe13g00600 386 Gene3D - 25 102 IPR036312 -
Bpe13g00600 386 MobiDBLite consensus disorder prediction 225 274 - -
Bpe13g00600 386 Pfam zinc-finger of the FCS-type, C2-C2 329 379 IPR007650 -
Bpe13g00600 386 PANTHER FCS-LIKE ZINC FINGER 8 104 381 IPR044593 -
Bpe13g00600 386 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Bpe13g00600 386 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Bpe13g00600 386 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Bpe13g00600 386 ProSiteProfiles Zinc finger FLZ-type profile. 337 381 IPR007650 -
Bpe13g00600 386 SMART aai_6 28 104 IPR016140 -
Bpe13g00600 386 Pfam Probable lipid transfer 16 102 IPR016140 -
Bpe13g00600 386 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 103 IPR036312 -
Bpe13g00600 386 CDD AAI_LTSS 35 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00600 - - - ming:122085454 290.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00724 Bpe-Chr8:8703375 Bpe13g00600 Bpe-Chr13:13081225 1.85E-12 dispersed
Bpe10g00400 Bpe-Chr10:11524506 Bpe13g00600 Bpe-Chr13:13081225 8.29E-49 dispersed
Bpe11g00219 Bpe-Chr11:1469577 Bpe13g00600 Bpe-Chr13:13081225 2.17E-42 dispersed
Bpe13g00600 Bpe-Chr13:13081225 Bpe14g01193 Bpe-Chr14:8933076 1.07E-51 dispersed
Bpe14g00864 Bpe-Chr14:6443397 Bpe13g00600 Bpe-Chr13:13081225 7.74E-12 dispersed
Bpe14g01198 Bpe-Chr14:8961360 Bpe13g00600 Bpe-Chr13:13081225 2.76E-10 dispersed
Bpe14g01346 Bpe-Chr14:10728776 Bpe13g00600 Bpe-Chr13:13081225 3.12E-09 dispersed
Bpe15g00100 Bpe-Chr15:9452097 Bpe13g00600 Bpe-Chr13:13081225 4.69E-11 dispersed
Bpe13g00599 Bpe-Chr13:13076969 Bpe13g00600 Bpe-Chr13:13081225 1.62E-10 tandem
Bpe13g00344 Bpe-Chr13:11278574 Bpe13g00600 Bpe-Chr13:13081225 3.80E-11 transposed
Bpe13g00600 Bpe-Chr13:13081225 Bpe04g00823 Bpe-Chr4:5428129 4.07E-67 wgd
Bpe13g00600 Bpe-Chr13:13081225 Bpe05g00896 Bpe-Chr5:22028791 1.83E-61 wgd
Bpe13g00600 Bpe-Chr13:13081225 Bpe06g00475 Bpe-Chr6:16048733 1.99E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005763 2 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00600 Bpe_Chr13 FPKM 0.460509 0.803596 1.024701 0.350363 0.0 0.151441 0.0 0.570225 0.567089 0.66794