Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00627 ATGGGGTCTATTGAAAATGGAAAACTCGGAAAGAATGGAGAACACGTAAAGGAAGACGCAGTAGAGGAGCCCATATTAACGGAACAAGCGCAGAGGTTTTGTATGTTTCCAATTAGGTATAAGCAACTTTGGGAGATGTACAAGAATGCCGAAGCCAGTTTTTGGACTGCTGAGGAGGTTGATCTCTCTCGGGATGTGCAACACTGGGAAACGCTTTCTGACTCCGAAAAACATTTCGTAAGCCATGTTCTAGCATTTTTTGCTGCTTCTGATGGGATCGTTATAGAAAACTTGGCTGCAAGATTCCTAACTGATGTTCAAGTCCCAGAAGCTCGAGCATTCTATGGATTCCAAATTGCAATGGAGAATGTTCATTCTGAGATGTATAGCTTGCTCTTGGAGACGTATATCAAAGATTCAATGGAGAAAACTAGATTGTTTAATGCTGTGGAAAACATTCCTTGTGTTGCTAGGAAGGCTAAATGGGCTTTGGATTGGATACATAGCTCCTCTGTATTTGCCGAAAGGCTCGTCGCATTTGCATGCATAGAAGGAATTTTCTTCTCAGGAAGTTTTTGTGCCATATTTTGGCTCAAGAAGCGAGGATTGATGCCAGGTCTGACGTTTTCGAACGAGCTCATTTCTAGAGACGAGGGCCTTCATTGCGATTTTGCTTGCCTTCTCTATAGTTTGCTGCGGAACCAACTTCGGTGGGAAATCGTGTATCGAATTGTGGAGGAAGCTGTGGAGATAGAGACTCAATTTGTCTGTGATGCGCTAAATTGTGCATTAATCGGCATGAACTCAACGCTAATGAGCCAGTACATAAAGTTTGTAGCCAACCGACTTTTGGTTGCATTGGGATATCGGAGGAAGTACATTGTCGAAAATCCATTTGACTGGATGGAATTAATTTCTTTGCAAGGAAAGGCAAACTTCTTTGAGAGAAGAGTTGGTGATTATCAAAAGGCCTCTGTTATGTCAACCCTGAAAGATGGTGGCTGCAATTTTGTGTTCAAGATGGATGAAGATTTCTAG 1038 42.29 MGSIENGKLGKNGEHVKEDAVEEPILTEQAQRFCMFPIRYKQLWEMYKNAEASFWTAEEVDLSRDVQHWETLSDSEKHFVSHVLAFFAASDGIVIENLAARFLTDVQVPEARAFYGFQIAMENVHSEMYSLLLETYIKDSMEKTRLFNAVENIPCVARKAKWALDWIHSSSVFAERLVAFACIEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNQLRWEIVYRIVEEAVEIETQFVCDALNCALIGMNSTLMSQYIKFVANRLLVALGYRRKYIVENPFDWMELISLQGKANFFERRVGDYQKASVMSTLKDGGCNFVFKMDEDF 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13226935 13229429 - Bpe010326.1 Bpe13g00627 113407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00627 345 Pfam Ribonucleotide reductase, small chain 32 298 IPR000358 GO:0009263
Bpe13g00627 345 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN A 1 345 - -
Bpe13g00627 345 Gene3D Ribonucleotide Reductase, subunit A 6 323 IPR012348 GO:0016491
Bpe13g00627 345 SUPERFAMILY Ferritin-like 15 323 IPR009078 -
Bpe13g00627 345 CDD RNRR2 33 307 IPR033909 GO:0009263
Bpe13g00627 345 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 1 345 IPR000358 GO:0009263
Bpe13g00627 345 ProSitePatterns Ribonucleotide reductase small subunit signature. 121 137 IPR030475 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00627 K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] - rcu:8261479 603.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00627 Bpe-Chr13:13226935 Bpe14g00251 Bpe-Chr14:2639570 1.01E-47 dispersed
Bpe13g00627 Bpe-Chr13:13226935 Bpe02g01531 Bpe-Chr2:18448010 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00556 . . Bpe13g00627 . Bma06g01535 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002424 3 2 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 2 4 4 2 3 2 6 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00627 Bpe_Chr13 FPKM 5.933007 6.349927 17.161734 19.514353 0.422388 0.288018 0.426077 60.821533 66.97377 68.104294