Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00635 ATGGCTTCGATGGTTGCCAAGCCCAGTTGTAATAACACTGCTCATCCTTCTTCTTCATTGACTGTCCAAGAAATTGGAAGTAGAAACAAGAGGAAATTTCGGGCCGATCCGCCTTTCGGTGACTTGAATAAGATGAATCCTTTATCTCAAAAGGAATGCTCTAGCTATGAGTTTGCGGCAGAGAAACCAGAAGTAATCTCAAGTCATGGGCACTCTAGTGCTTGTGATCTATGTAGCGTTCGCCAAGATCATTTTGATGGATTTAAACTTGATTTTGGATTATCCAATGGTGAAAATCCAATTGATGTCAACCCTAGGTGGCCTAGAGAGGACTTGGAGACAGATGAATTCCAAGATGCTGATTGGAGTGATTTTACCGAAGCTGAGCTGGAAGAACTTGTTTTGATTAATTTAAGCACCATTTTCAAGGGTGCAATCAAGAAAATTGTTGCTTGTGGCTACACTGAAGAAGCTGCAACAAAAGCTGTCTCAAGGTCTGGCATCTGTTATGGCAGTAAAGACACTGTGTCAAATATAATGGATAATGGCTTGGCGTTTCTTAAAAGTGGGCAGGACATTGATTATTCAAGGGAACATCTCTTCGAAGATCTACAGCAACTGGAGAAATATATACTTGCAGAAATGGTTTGTGTTCTTCGAGTGGTTAGACCATTCTTCAGCAATGGGGATGCTATGTGGTGCTTATTAATATCCGACATGAATGTGTCTCATGCATGTGCAGTGGATGGTGATTTTTTTGGTACTATGGTCACTGATGGGAATTCATCCACCCAGGTGACAAAGAGCTCTGAGAAATCTAGTAAGACAAATCTTCCTATCACATGTTCTCATAGCTCTCAATCTGAAGCCACGGGATTTTCAAATAATTCAAAGTCAAAGAATTTGCTTGTTAATAGTGGACAGACAATGGATGAAGACGGCATTAACTCCACATCTGATAGTGTGGACAATAAACATTTCAGTGCAGTGGGTTCGTCTTCATTTGCATCTGAAGCCAAGATTGGAAGCAGCAAAAAGTTTCAATCTAATACTGCTAAAAGGGAGTATATACTTCGGCAGAAATCACTTCATTTGGAGAAAAACTATCGAACCTATGGATCTAAAGGATCTTCAAGAACAGGGAAGCTGAGTGGCATGGGTAGTTTGATCTTGGATAAGAAATTAAAGGCTGTTTCTCACTCTACATCAATAAATATAAAGAGCGCTCCCTTAAAAATAAGGGAGGCGAATGGAATCGATGTTGGTCAAGATTATGAAAACCATAATCTATCGACAGATGCTCTGTCCTCTTCTTATGTAGTATCAAACTTGGGAAGTCTTGATACAATTCCTGTTTTTCTTAAAAAGAATATACAACCCGAAGCTGAAATTTTACCATCGATTACAGCTGCTGATACTGAACTCTCTCTTTCTTTGCCAACAAAATGTGATACTGCTTCATTGCCCATTAGCTGCAGTGAAACTTCTAATGTTGGTCATGCTGGGAGGCAATTTGACAAGTCTCTTAAGCCGTGGGTTCCTCATGAAAAGAAAGATGACATGATTCTAAAGCTGGTTCCTAGAGTGCGAGAACTACAAACTCAACTCCAAGAATGGAATGAGTGGGCCAATCAAAAGGTTATGCAAGCTGCTCGTAGACTCGGTAAGGATAAGACTGAACTTAAGACTCTAAGACAAGAGAAAGAAGAAGTTGAAAGGTTGAAAAAAGAGAATCAGACTCTGGAAGAAAATACAATGAAAAAGCTTTCAGAAATGAAAAACGCGTTATGCAAGACTAGTGGGCAGGTTGAATTAGCTAATTCTGCAGTTCGCAGGCTTGAGATAGAAAATGTTTCACTGAGGCAAGCGATGGAGGATGCAAAATTACGTGCTGCAGAAGCTGCTGCTAACTGCCAGGAGGTATCAAAGAGAGAGAAGAAGACACTAATGAAATTTAAATCTTGGGAAAAACAGAAAACTGTGTTGCAGGAAGAACTCGTGGCTGAAAAACGCATATTATCGCAGCTGTCACTTGAACTAGAAGAAGCTAGCAATCTCCAGGAGCAGCAGGAGGCGAAATGGAAATTCGAAGAGCAAGCCCGACTTCAACTATTTACCCAAGCAACTTTGATTAGAAAGGAAAGAGAACAAATCGAGGCTTTGGTGGAAGAAAAGCAAGACATAATCAGACTAAAAGCAGAAAACAATCTTCAAAAGTACAAAGATGATATCCAAAAGCTAGATAAAGAAATTTCCCTGCTGAGACGGAAGAGTGATTCTTCGAGAATTGCCGCCCTGAAAAGAGGAATCGACGGAAGCTATGCCAGCATACTTTTCGAGTCCAGAAATACAACCGATCACAAGGAGACTCGGGACCGTAAATTGGCGTCGTCGATGAATAATCACCAACCCCAATCGGGGACAGGATCGGTAAAACGAGAACACGAGTGTGTGATGTGCCTTACGGAGGAGATGTCCGTTGTTTTTCTGCCTTGTGCTCACCAGGTGGTCTGTAGAACCTGCAATGAACTTCATGAAAAGCAGGGAATGAAGGATTGCCCTTCTTGTCGGAGCCCCATACAGCAGCGAATTTCTGTACGTCTTCTTCAAGTTCTCTCTCCTCTCGCTCTCTCCCTCCCTGAGGTTGGACTGAATTTGTCCGAGTCCAAGGAAAAGGACTGGGATATCTGCGGGGTGGAGATTACTGATTATGCAGTTGAGGTGAATCAATGTCCTTTCAAGTGGAGCTGCGAGGTCATCTACGATGAGCTTTCAAAATCTCTGAAACTTGTGGTGGTTTGTTTATATATATTTTTTTTTTGGTGTTTGCATTTTGCAACCATATAA 2847 41.34 MASMVAKPSCNNTAHPSSSLTVQEIGSRNKRKFRADPPFGDLNKMNPLSQKECSSYEFAAEKPEVISSHGHSSACDLCSVRQDHFDGFKLDFGLSNGENPIDVNPRWPREDLETDEFQDADWSDFTEAELEELVLINLSTIFKGAIKKIVACGYTEEAATKAVSRSGICYGSKDTVSNIMDNGLAFLKSGQDIDYSREHLFEDLQQLEKYILAEMVCVLRVVRPFFSNGDAMWCLLISDMNVSHACAVDGDFFGTMVTDGNSSTQVTKSSEKSSKTNLPITCSHSSQSEATGFSNNSKSKNLLVNSGQTMDEDGINSTSDSVDNKHFSAVGSSSFASEAKIGSSKKFQSNTAKREYILRQKSLHLEKNYRTYGSKGSSRTGKLSGMGSLILDKKLKAVSHSTSINIKSAPLKIREANGIDVGQDYENHNLSTDALSSSYVVSNLGSLDTIPVFLKKNIQPEAEILPSITAADTELSLSLPTKCDTASLPISCSETSNVGHAGRQFDKSLKPWVPHEKKDDMILKLVPRVRELQTQLQEWNEWANQKVMQAARRLGKDKTELKTLRQEKEEVERLKKENQTLEENTMKKLSEMKNALCKTSGQVELANSAVRRLEIENVSLRQAMEDAKLRAAEAAANCQEVSKREKKTLMKFKSWEKQKTVLQEELVAEKRILSQLSLELEEASNLQEQQEAKWKFEEQARLQLFTQATLIRKEREQIEALVEEKQDIIRLKAENNLQKYKDDIQKLDKEISLLRRKSDSSRIAALKRGIDGSYASILFESRNTTDHKETRDRKLASSMNNHQPQSGTGSVKREHECVMCLTEEMSVVFLPCAHQVVCRTCNELHEKQGMKDCPSCRSPIQQRISVRLLQVLSPLALSLPEVGLNLSESKEKDWDICGVEITDYAVEVNQCPFKWSCEVIYDELSKSLKLVVVCLYIFFFWCLHFATI 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13254846 13259902 + Bpe010335.1 Bpe13g00635 113415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00635 948 PANTHER OS05G0141500 PROTEIN 9 868 - -
Bpe13g00635 948 Coils Coil 711 757 - -
Bpe13g00635 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 868 IPR013083 -
Bpe13g00635 948 PANTHER OS05G0141500 PROTEIN 9 868 IPR046934 -
Bpe13g00635 948 Coils Coil 603 644 - -
Bpe13g00635 948 MobiDBLite consensus disorder prediction 785 808 - -
Bpe13g00635 948 MobiDBLite consensus disorder prediction 1 46 - -
Bpe13g00635 948 Coils Coil 666 693 - -
Bpe13g00635 948 SUPERFAMILY RING/U-box 812 864 - -
Bpe13g00635 948 MobiDBLite consensus disorder prediction 1 26 - -
Bpe13g00635 948 Pfam Zinc finger, C3HC4 type (RING finger) 814 862 - -
Bpe13g00635 948 Coils Coil 554 591 - -
Bpe13g00635 948 ProSiteProfiles Zinc finger RING-type profile. 817 857 IPR001841 -
Bpe13g00635 948 Pfam Family of unknown function (DUF6592) 138 248 IPR046527 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00635 - - - qsu:112009955 1054.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00635 Bpe14g01163 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00635 Bpe-Chr13:13254846 Bpe12g00123 Bpe-Chr12:875738 2.86E-06 dispersed
Bpe07g00218 Bpe-Chr7:1546242 Bpe13g00635 Bpe-Chr13:13254846 5.75E-20 transposed
Bpe14g01164 Bpe-Chr14:8659654 Bpe13g00635 Bpe-Chr13:13254846 0 transposed
Bpe13g00635 Bpe-Chr13:13254846 Bpe14g01162 Bpe-Chr14:8650037 4.54E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004013 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00635 Bpe_Chr13 FPKM 5.5835 6.1233 16.988085 18.877926 2.507026 2.724439 3.397674 14.14137 13.947858 15.964997