Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00646 ATGAAATCAGTTTCGCTTCCACTGAATGGGAAAATCTTTCCAAATCTCAGAATGGATGTACCCAGGGGCCGCTTACAGATTTGCTGTGCGGCCAAACCTGAGACAGTGGACAAAGTCTGTGAAATAGTGAGGAAGCAGCTAGCTTTACCTGATGATTCTGCTGTCACCGGGGAGTCCAAGTTCGCCTCTCTTGGGGCTGACTCTCTCGATACGGTTGAGATTGTGATGGGCCTTGAAGAAGAATTCGGAATCAGCGTGGAGGAAGAAAGTGCCCAAAGCATTGCCACTGTCCAGGATGCCGCGGACCTGATTGAGAAGCTCATTGGGAAGTAG 333 49.85 MKSVSLPLNGKIFPNLRMDVPRGRLQICCAAKPETVDKVCEIVRKQLALPDDSAVTGESKFASLGADSLDTVEIVMGLEEEFGISVEEESAQSIATVQDAADLIEKLIGK 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13310984 13311969 - Bpe010346.1 Bpe13g00646 113426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00646 110 Gene3D - 31 110 IPR036736 -
Bpe13g00646 110 ProSitePatterns Phosphopantetheine attachment site. 63 78 IPR006162 -
Bpe13g00646 110 PANTHER ACYL CARRIER PROTEIN 2, CHLOROPLASTIC-RELATED 2 109 - -
Bpe13g00646 110 Pfam Phosphopantetheine attachment site 37 104 IPR009081 -
Bpe13g00646 110 SUPERFAMILY ACP-like 33 108 IPR036736 -
Bpe13g00646 110 Hamap Acyl carrier protein [acpP]. 34 108 IPR003231 GO:0006633
Bpe13g00646 110 SMART Phosphopantetheine attachment site 36 90 IPR020806 GO:0031177
Bpe13g00646 110 TIGRFAM acyl_carrier: acyl carrier protein 34 106 IPR003231 GO:0006633
Bpe13g00646 110 PANTHER ACYL CARRIER PROTEIN 2 109 IPR044813 GO:0000036|GO:0006633
Bpe13g00646 110 ProSiteProfiles Carrier protein (CP) domain profile. 33 108 IPR009081 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00646 - - - cpap:110819991 163.696
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00646 Bpe14g01151 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01269 Bpe-Chr11:9494209 Bpe13g00646 Bpe-Chr13:13310984 4.05E-10 dispersed
Bpe13g00646 Bpe-Chr13:13310984 Bpe13g00883 Bpe-Chr13:14946583 7.35E-08 dispersed
Bpe03g00682 Bpe-Chr3:26980181 Bpe13g00646 Bpe-Chr13:13310984 2.50E-17 transposed
Bpe11g01353 Bpe-Chr11:10145316 Bpe13g00646 Bpe-Chr13:13310984 1.48E-48 transposed
Bpe12g00460 Bpe-Chr12:10343710 Bpe13g00646 Bpe-Chr13:13310984 6.85E-22 transposed
Bpe13g00646 Bpe-Chr13:13310984 Bpe14g01151 Bpe-Chr14:8576897 7.56E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g369 . . . . . Bpe14g01151 . . . Cmo17g00295 . . . . . . . . . . . . . . Cla06g00507 Cam06g0547 Cec06g0547 Cco06g0555 Clacu06g0533 Cmu06g0532 Cre06g1301 Cone14ag0788 Cone15ag0789 Cone7ag0182 Cone4ag0177 . . Chy11g01467 . Blo02g00577 Blo07g00190 Bda11g00543 . . Bpe13g00646 . Bma06g01520 . . . Cma08g01200 Cma17g00305 Car08g01078 Car17g00281 Cpe12g00257 Cpe17g00097 Bhi12g01745 . . . . . . . . . . . . . Lsi09g01393 . . Cme11g01973
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008190 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00646 Bpe_Chr13 FPKM 0.580304 1.12295 0.659076 0.764342 0.468187 0.51925 0.448164 1.750358 1.422205 1.775716