Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe13g00654 | ATGGAACGTTACGGTGGGGATACGGAGAAGTCGCCTTCCGATCTGCAGCCTGAATGGACCTCTCAGAAATCCGAAACCGGGCTAGAGGAGCCCCTGTGGCGGTTGGGACTGGGAGGGGAGGAGTCTTACCCGGAGCGACCTGACGAGGCCAACTGTATCTATTACTTACGTACGGGGGTTTGTGGGTACGGTTCGCGTTGCCGATTCAATCATCCCCGTCGCAATGTGGTAATTTCTGGATCTACTAGACATGAGAGAGGGAAGTACCCAGAGCGAATAGGCCAACCCGAATGCCAGTACTACATGAAGACTGGGATGTGTAAATTTGGATTGTCTTGTAAATATCACCATCCTATGGAGGGAGGTGGTTCCATTGACTGCGTTTCGGTCTTACTAAATTATTATGGATACCCATTGCGGCCGGGCGAAAGGGAATGTTCTTATTATTCCAAAACGGGCTCGTGCAGTTTTGGTTCCACATGCAAATTCCATCATCCACAGCCTGTTGGAATGCAGCCTCCAGCCCCCTCACCAGCTATGTATCCTCAAATGCAGTCTCCATCGGTTCCTTCTTCACAGCAGTATGGAGTAGTAGTAGCTGGAAGGCCATCTTTGCTTCCTAGCTCGTATATCCATAGCCCTTATGGCCCTATAATGATTTCTCCGAGGATTGTCCCATTTCAGAGCTGGAGTCATTATCCGGTTGGTGTATTTCCCTCTCGTTTTAGAACATTTCCTTGCTGTTCAATAATGCGTTTAATTTTGTTGCAGACATCTATGAGCCAAGTTGCACCTCCATCTCCTAGCACTCAACCTATAATTGATTCAGGAACATTATTCAGTGTAACACAACTTACTCCTGCACCTGCATATACTGGATCATACCAACCGATGCCTTCTTCTGCTGGTTTGTCGCTTGGTAACCAGTTATTTCCTGACAGACCTGGCCAACCAGAGTGTCAGTATTACTTGAGAACAGGGAATTGTAAATTTGGATCTTCTTGCAAATACCATCATCCGCCGGAATTAGCTGCTCCTAAAACAGATATTTTTCCTGGCTCTTCAGGTCTTCCTCTTCGCCCGGGTGCAGCACTCTGTACTCACTTTCTACAAAATGGGTTCTGTAAGTTTGGCTCAGCCTGTAAATTTGACCATTCCTTGGAAACACTTGATGGTAGCCCCCATTGGTTGTCTCCTTCTATTTTTTTGGCTGCCCCATCATCCTCCTCTTCAGAGTTTCGGCCCCAACTCAACACCTGA | 1260 | 47.46 | MERYGGDTEKSPSDLQPEWTSQKSETGLEEPLWRLGLGGEESYPERPDEANCIYYLRTGVCGYGSRCRFNHPRRNVVISGSTRHERGKYPERIGQPECQYYMKTGMCKFGLSCKYHHPMEGGGSIDCVSVLLNYYGYPLRPGERECSYYSKTGSCSFGSTCKFHHPQPVGMQPPAPSPAMYPQMQSPSVPSSQQYGVVVAGRPSLLPSSYIHSPYGPIMISPRIVPFQSWSHYPVGVFPSRFRTFPCCSIMRLILLQTSMSQVAPPSPSTQPIIDSGTLFSVTQLTPAPAYTGSYQPMPSSAGLSLGNQLFPDRPGQPECQYYLRTGNCKFGSSCKYHHPPELAAPKTDIFPGSSGLPLRPGAALCTHFLQNGFCKFGSACKFDHSLETLDGSPHWLSPSIFLAAPSSSSSEFRPQLNT | 419 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 13357877 | 13360238 | - | Bpe010355.2 | Bpe13g00654 | 113434 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe13g00654 | 419 | SUPERFAMILY | CCCH zinc finger | 143 | 167 | IPR036855 | GO:0046872 | |
Bpe13g00654 | 419 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | MobiDBLite | consensus disorder prediction | 13 | 27 | - | - | |
Bpe13g00654 | 419 | ProSiteProfiles | Zinc finger C3H1-type profile. | 360 | 388 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 14 | 417 | - | - | |
Bpe13g00654 | 419 | ProSiteProfiles | Zinc finger C3H1-type profile. | 140 | 168 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | PANTHER | PROTEIN PHOSPHATASE RELATED | 14 | 417 | - | - | |
Bpe13g00654 | 419 | SMART | c3hfinal6 | 360 | 387 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | SMART | c3hfinal6 | 314 | 341 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | SMART | c3hfinal6 | 140 | 167 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | SUPERFAMILY | CCCH zinc finger | 363 | 390 | IPR036855 | GO:0046872 | |
Bpe13g00654 | 419 | Gene3D | - | 44 | 125 | - | - | |
Bpe13g00654 | 419 | Gene3D | - | 314 | 400 | - | - | |
Bpe13g00654 | 419 | Gene3D | - | 126 | 176 | - | - | |
Bpe13g00654 | 419 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Bpe13g00654 | 419 | SUPERFAMILY | CCCH zinc finger | 96 | 120 | IPR036855 | GO:0046872 | |
Bpe13g00654 | 419 | SUPERFAMILY | CCCH zinc finger | 48 | 74 | IPR036855 | GO:0046872 | |
Bpe13g00654 | 419 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 73 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 142 | 167 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 363 | 386 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 119 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 316 | 341 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | SUPERFAMILY | CCCH zinc finger | 319 | 341 | IPR036855 | GO:0046872 | |
Bpe13g00654 | 419 | ProSiteProfiles | Zinc finger C3H1-type profile. | 314 | 342 | IPR000571 | GO:0046872 | |
Bpe13g00654 | 419 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe11g00186 | Bpe-Chr11:1278824 | Bpe13g00654 | Bpe-Chr13:13357877 | 6.75E-121 | dispersed | |
Bpe11g01275 | Bpe-Chr11:9552192 | Bpe13g00654 | Bpe-Chr13:13357877 | 3.39E-88 | dispersed | |
Bpe12g00272 | Bpe-Chr12:2850236 | Bpe13g00654 | Bpe-Chr13:13357877 | 5.71E-73 | dispersed | |
Bpe13g00654 | Bpe-Chr13:13357877 | Bpe15g00167 | Bpe-Chr15:12145707 | 3.93E-67 | dispersed | |
Bpe13g00654 | Bpe-Chr13:13357877 | Bpe03g00449 | Bpe-Chr3:23531545 | 1.23E-119 | wgd | |
Bpe13g00654 | Bpe-Chr13:13357877 | Bpe05g00851 | Bpe-Chr5:21716389 | 1.02E-146 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22302 | PF00642 | zf-CCCH | 5.50E-09 | CL0537 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe13g00654 | - | - | vvi:100257896 | 489.574 |