Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00654 ATGGAACGTTACGGTGGGGATACGGAGAAGTCGCCTTCCGATCTGCAGCCTGAATGGACCTCTCAGAAATCCGAAACCGGGCTAGAGGAGCCCCTGTGGCGGTTGGGACTGGGAGGGGAGGAGTCTTACCCGGAGCGACCTGACGAGGCCAACTGTATCTATTACTTACGTACGGGGGTTTGTGGGTACGGTTCGCGTTGCCGATTCAATCATCCCCGTCGCAATGTGGTAATTTCTGGATCTACTAGACATGAGAGAGGGAAGTACCCAGAGCGAATAGGCCAACCCGAATGCCAGTACTACATGAAGACTGGGATGTGTAAATTTGGATTGTCTTGTAAATATCACCATCCTATGGAGGGAGGTGGTTCCATTGACTGCGTTTCGGTCTTACTAAATTATTATGGATACCCATTGCGGCCGGGCGAAAGGGAATGTTCTTATTATTCCAAAACGGGCTCGTGCAGTTTTGGTTCCACATGCAAATTCCATCATCCACAGCCTGTTGGAATGCAGCCTCCAGCCCCCTCACCAGCTATGTATCCTCAAATGCAGTCTCCATCGGTTCCTTCTTCACAGCAGTATGGAGTAGTAGTAGCTGGAAGGCCATCTTTGCTTCCTAGCTCGTATATCCATAGCCCTTATGGCCCTATAATGATTTCTCCGAGGATTGTCCCATTTCAGAGCTGGAGTCATTATCCGGTTGGTGTATTTCCCTCTCGTTTTAGAACATTTCCTTGCTGTTCAATAATGCGTTTAATTTTGTTGCAGACATCTATGAGCCAAGTTGCACCTCCATCTCCTAGCACTCAACCTATAATTGATTCAGGAACATTATTCAGTGTAACACAACTTACTCCTGCACCTGCATATACTGGATCATACCAACCGATGCCTTCTTCTGCTGGTTTGTCGCTTGGTAACCAGTTATTTCCTGACAGACCTGGCCAACCAGAGTGTCAGTATTACTTGAGAACAGGGAATTGTAAATTTGGATCTTCTTGCAAATACCATCATCCGCCGGAATTAGCTGCTCCTAAAACAGATATTTTTCCTGGCTCTTCAGGTCTTCCTCTTCGCCCGGGTGCAGCACTCTGTACTCACTTTCTACAAAATGGGTTCTGTAAGTTTGGCTCAGCCTGTAAATTTGACCATTCCTTGGAAACACTTGATGGTAGCCCCCATTGGTTGTCTCCTTCTATTTTTTTGGCTGCCCCATCATCCTCCTCTTCAGAGTTTCGGCCCCAACTCAACACCTGA 1260 47.46 MERYGGDTEKSPSDLQPEWTSQKSETGLEEPLWRLGLGGEESYPERPDEANCIYYLRTGVCGYGSRCRFNHPRRNVVISGSTRHERGKYPERIGQPECQYYMKTGMCKFGLSCKYHHPMEGGGSIDCVSVLLNYYGYPLRPGERECSYYSKTGSCSFGSTCKFHHPQPVGMQPPAPSPAMYPQMQSPSVPSSQQYGVVVAGRPSLLPSSYIHSPYGPIMISPRIVPFQSWSHYPVGVFPSRFRTFPCCSIMRLILLQTSMSQVAPPSPSTQPIIDSGTLFSVTQLTPAPAYTGSYQPMPSSAGLSLGNQLFPDRPGQPECQYYLRTGNCKFGSSCKYHHPPELAAPKTDIFPGSSGLPLRPGAALCTHFLQNGFCKFGSACKFDHSLETLDGSPHWLSPSIFLAAPSSSSSEFRPQLNT 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13357877 13360238 - Bpe010355.2 Bpe13g00654 113434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00654 419 SUPERFAMILY CCCH zinc finger 143 167 IPR036855 GO:0046872
Bpe13g00654 419 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Bpe13g00654 419 MobiDBLite consensus disorder prediction 13 27 - -
Bpe13g00654 419 ProSiteProfiles Zinc finger C3H1-type profile. 360 388 IPR000571 GO:0046872
Bpe13g00654 419 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 14 417 - -
Bpe13g00654 419 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Bpe13g00654 419 PANTHER PROTEIN PHOSPHATASE RELATED 14 417 - -
Bpe13g00654 419 SMART c3hfinal6 360 387 IPR000571 GO:0046872
Bpe13g00654 419 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Bpe13g00654 419 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Bpe13g00654 419 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Bpe13g00654 419 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Bpe13g00654 419 SUPERFAMILY CCCH zinc finger 363 390 IPR036855 GO:0046872
Bpe13g00654 419 Gene3D - 44 125 - -
Bpe13g00654 419 Gene3D - 314 400 - -
Bpe13g00654 419 Gene3D - 126 176 - -
Bpe13g00654 419 MobiDBLite consensus disorder prediction 1 31 - -
Bpe13g00654 419 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Bpe13g00654 419 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Bpe13g00654 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Bpe13g00654 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872
Bpe13g00654 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 363 386 IPR000571 GO:0046872
Bpe13g00654 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Bpe13g00654 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 316 341 IPR000571 GO:0046872
Bpe13g00654 419 SUPERFAMILY CCCH zinc finger 319 341 IPR036855 GO:0046872
Bpe13g00654 419 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Bpe13g00654 419 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00186 Bpe-Chr11:1278824 Bpe13g00654 Bpe-Chr13:13357877 6.75E-121 dispersed
Bpe11g01275 Bpe-Chr11:9552192 Bpe13g00654 Bpe-Chr13:13357877 3.39E-88 dispersed
Bpe12g00272 Bpe-Chr12:2850236 Bpe13g00654 Bpe-Chr13:13357877 5.71E-73 dispersed
Bpe13g00654 Bpe-Chr13:13357877 Bpe15g00167 Bpe-Chr15:12145707 3.93E-67 dispersed
Bpe13g00654 Bpe-Chr13:13357877 Bpe03g00449 Bpe-Chr3:23531545 1.23E-119 wgd
Bpe13g00654 Bpe-Chr13:13357877 Bpe05g00851 Bpe-Chr5:21716389 1.02E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22302 PF00642 zf-CCCH 5.50E-09 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00654 - - vvi:100257896 489.574