Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00660 GGAGGCAATATGGCGATGAATGAGCGAAAAACTATTGACTTAGACCAAGGATGGGATATCATGCAAAAGGGTATTACCAAGCTGAAAAACATTCTAGAGGGGTTGCCTGAGCCGCAGTTTAACTCGGAGGACTATATGATGCTCTACACAACCATCTATAATATGTGTACTCAAAAACCTCCGCATGATTACTCCCAGCAACTGTATGATAAATACCGTGAATCTTTTGAAGAGTACATTACATCAACGGTGTTGCCATCTTTGAGGGAGAAGCATGATGAGTTTATGTTAAGAGAGCTTGTGAAAAGGTGGGCAAATCATAAAGTGATGGTTAGGTGGCTTTCTCGCTTCTTCTATTATCTTGATCGATATTTTATTGCTCGGAGATCTCTTCCGCCCCTTAATGAAGTTGGACTCACTTGCTTCCGCGAACTGGTTTATCAGGAGTTAAATGGCAAAGCCCGAGATGCTGTTATTTCTCTGATTGATCAAGAACGTGAAGGAGAGCAGATTGACCGAGCTCTTTTGAAAAATGTCTTAGACATATTTGTTGAGATTGGAATGGGGCAAATGGAATATTATGAAAATGACTTTGAGGCAGACATGCTTAAAGACACTGCTGCTTATTACTCACGAAAAGCTTCAAACTGGATTCTCGAAGATTCCTGTCCCGATTATATGCTAAAGGCCGAGGAGTGCTTAAAACGGGAAAAAGATAGAGTTTCACATTATTTGCACTCAAGCAGCGAGCAAAAGTTACTTGAGAAAGTCCAGAACGAGTTGTTGTCTGTATATGCAATCCAACTGCTTGAAAAAGAGCATTCTGGTTGCCATGCTTTACTCAGAGATGACAAGGTGGAAGATCTTTCAAGAATGTTCAGACTATTTTCTAAAATTCCTAGAGGATTAGATCCCGTTTCCAATATTTTTAAGCAGCATGTCACTGCCGAAGGAACAGCCTTGGTTAAACTGGCAGAAGATGCTGCAAGCAATAAAAGGGCTGATAAGAAAGACATTGTTGGCTTGCAAGAACAGGTAAGTGTGACAGAAACTGATTTAGTTTGTGATTTTCAGGTTTTTGTAAGAAAGGTTATCGAACTGCATGACAAATATCTAGCATACGTGAATGACTGCTTTCTAAATCATACTCTTTTTCACAAGGCTCTCAAAGAAGCTTTTGAGGTCTTCTGTAACAAAGGTGTTGCTGGAAGTTCAAGTGCGGAACTACTTGCTACATTTTGTGATAACATTCTTAAGAAAGGTGGAAGTGAGAAGCTGAGTGATGAGGCCATTGAGGACACACTTGAGAAGGTCGTTAAGTTACTTGCATATATTAGTGACAAGGACCTGTTTGCCGAATTCTACCGAAAAAAGCTAGCACGACGCCTTCTTTTTGATAAAAGTGCTAATGATGATCATGAGAGAAGTATTTTGACAAAATTGAAGCAGCAATGTGGTGGTCAGTTCACCTCAAAGATGGAGGGAATGGTCACAGATTTGACTCTAGCAAGGGAGAATCAAACCAGCTTTGAGGAATATCTCAGTCACAACTCTCATGCAAATCCTGGGATTGACTTGACAGTTACTGTCCTGACAACTGGCTTCTGGCCTAGCTATAAGTCTTTTGATCTTAACCTTCCTGCAGAGATGGTAGGCTCAAAAAATCTGGATCAAAGTCTGCATTCTTTTGGAGAATTATTAATTTCTCCATTTGTTATTTTTCTTCAGGTCAAGTGTGTCGAAGTTTTCAGGGAATTTTATCAAACAAAAACGAAGCACAGGAAACTTACATGGATATACTCACTGGGTACATGTAACATCATTGGGAAATTCGAACCAAAAACCATTGAATTGATTGTGACAACCTATCAGGCTTCTACTCTTCTACTATTCAACTCCGCAGACAGATTAAGTTATTCCGAAATCATGACACAATTGAACTTGAGTGACGACGATGTTGTTAGACTGCTACATTCTTTGTCATGCGCAAAGTATAAAATTCTTAACAAGGAGCCGAACACCAAAACCATTTCGCCTACTGATTACTTCGAGTTTAACTCAAAATTTACAGACAAAATGAGAAGGATAAAGATTCCTCTCCCTCCTGTGGATGAGAAGAAGAAAGTAATTGAAGACGTGGACAAGGATCGACGGTATGCGATCGATGCTTCGATCGTGCGCATAATGAAGAGCAGAAAAGTTTTGGGTCATCAGCAGCTGGTGATGGAGTGCGTCGAGCAATTGGGTCGGATGTTCAAGCCTGATTTCAAGGCGATCAAAAAGCGGATCGAAGATCTGATCACTCGAGACTATCTGGAACGGGACAAAGATAACCCCAACATGTTCAGGTACTTGGCATGA 2361 40.49 GGNMAMNERKTIDLDQGWDIMQKGITKLKNILEGLPEPQFNSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSTVLPSLREKHDEFMLRELVKRWANHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFRELVYQELNGKARDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMEYYENDFEADMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEQKLLEKVQNELLSVYAIQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKRADKKDIVGLQEQVSVTETDLVCDFQVFVRKVIELHDKYLAYVNDCFLNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSHNSHANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVGSKNLDQSLHSFGELLISPFVIFLQVKCVEVFREFYQTKTKHRKLTWIYSLGTCNIIGKFEPKTIELIVTTYQASTLLLFNSADRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKDNPNMFRYLA 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13406773 13411554 + Bpe010361.1 Bpe13g00660 113440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00660 786 SMART Cullin_Nedd8_2 713 780 IPR019559 -
Bpe13g00660 786 Gene3D Cullin Repeats 406 520 - -
Bpe13g00660 786 PANTHER CULLIN 6 553 IPR045093 -
Bpe13g00660 786 PANTHER CULLIN 3B 577 785 - -
Bpe13g00660 786 ProSiteProfiles Cullin family profile. 405 661 IPR016158 -
Bpe13g00660 786 SUPERFAMILY Winged helix DNA-binding domain 701 786 IPR036390 -
Bpe13g00660 786 SMART cul_2 436 611 IPR016158 -
Bpe13g00660 786 PANTHER CULLIN 577 785 IPR045093 -
Bpe13g00660 786 Pfam Cullin family 28 689 IPR001373 GO:0006511|GO:0031625
Bpe13g00660 786 Gene3D Cullin; Chain C, Domain 2 523 702 - -
Bpe13g00660 786 ProSitePatterns Cullin family signature. 759 786 IPR016157 GO:0006511|GO:0031461|GO:0031625
Bpe13g00660 786 Gene3D Cullin Repeats 145 266 - -
Bpe13g00660 786 SUPERFAMILY Cullin repeat-like 14 400 IPR016159 -
Bpe13g00660 786 Gene3D - 703 786 IPR036388 -
Bpe13g00660 786 Gene3D Cullin Repeats 5 144 - -
Bpe13g00660 786 Gene3D Cullin Repeats 270 405 - -
Bpe13g00660 786 PANTHER CULLIN 3B 6 553 - -
Bpe13g00660 786 SUPERFAMILY Cullin homology domain 578 702 IPR036317 -
Bpe13g00660 786 SUPERFAMILY Cullin homology domain 404 553 IPR036317 -
Bpe13g00660 786 Pfam Cullin protein neddylation domain 716 778 IPR019559 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00660 K03347 CUL1, CDC53; cullin 1 - rcu:8262419 1402.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00840 Bpe13g00660 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00840 Bpe-Chr5:21629555 Bpe13g00660 Bpe-Chr13:13406773 0 dispersed
Bpe11g01462 Bpe-Chr11:10857449 Bpe13g00660 Bpe-Chr13:13406773 1.45E-129 dispersed
Bpe13g00660 Bpe-Chr13:13406773 Bpe11g01459 Bpe-Chr11:10839992 6.79E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g309 . . . Bda08g00287 . . . Bma05g01038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01532 . . . Blo07g00176 Bda11g00530 . Bpe05g00840 Bpe13g00660 . Bma06g01505 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001518 2 4 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 3 2 2 7 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00660 Bpe_Chr13 FPKM 0.093431 0.0 3.229486 3.392759 0.264932 0.247723 0.191075 0.625474 0.220863 0.232156