Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00691 ATGGCTCTACAAAAGTTTTTACCTTCTAGCGATGCGCCTTCTCCTATGAAACATTTAAGTCTTCCTGGCGAGACACATAAACTTGCCAATTCCGAGCCCAACCATAACGTGGAGCCTGATGTTGAAATTGACATCAGAGAAGTTTACTTTCTCATTATGCATTTTCTTTCTTCTGGGCCTTGCCAAAGAACTTATGGACAACTTTGGAATGAACTTCTTGAACATCAACTCTTACCCAGAAGATATCATGCTTGGTATTCAAGAAATGGTGTGCACTGCGGAGATGAAAATGATGATGGTCTGTCATTCCCTTTAAGTTACAATAAATTGGTGGAGAGGTATTCTCACATAAAAAAAGATCACTTAGTAAAGCTTTTGAAGCAGTTGGTCCTTTGTAAAACCTCTTCATCAAACAGCACAAATAGTGGACGTGTTCCTAATGCTGCTGATGTTCCTACGCTTTTGGGAACTGGCTCTTTTTCACTATTAAGCTATGACAGAGATGAAGGAATTAATGAACCAAGTCATCCTCTGGTGTATATGCGATGGCCTCATATGAAAGCTGATCAGGTTCGTGGATTAAGTTTGAGAGAACTCGGGGGTGGTTTCTCCAGACATCAGCGTGCACCTTCCATACGCGCAGCATGTTATGCTATTGCCAAGCCATCTACTATGGTACAAAAGATGCAAAATATCAAGAGGCTACGGGGGCATCGAAATGCTGTCTATTGTGCAATATTTGATAGATTGGGGAGGTATGTCGTCACTGGTTCAGATGACCGCCTTGTTAAAATTTGGTCAATGGAAACGGCATATTGCTTGGCCAGCTGCCGTGGTCACGAATTTGTTTCCTCAATTGGAACAAATTGTTTGTTTATTATAATCCCATTTGTGATTTTTAAGGGTGATATTACTGACTTAGCCGTCAGTTCCAACAATGCCGTGGTTGCATCCTCTTCCAATGATTTTATCATTCGTGTTTGGCGTCTTCCTGATGGGCTGCCAATTTCAGTTTTGCGAGGACATACTGGTGCTGTCACCGCCATTGCATTTAGTCCAAGGCCAGGATACCAGCTTCTATCATCATCTGATGATGGAACATGTAGGATATGGGATGCTAGGAACTCTTTGCAGCATAATCCACGAATTTACGTTCCAAGGCCATTAGATTCTGTAACTGGAAGGAGTAGTGGCCCTTCCTCTAGTAATGTTTCTCGTAATCATCAAATATTTTGCTGTGCTTTTAATGCTAATGGGACCATTTTTGTCACTGGTAGTTCAGACACACTTGCAAGGGTGTGGAATGCATGTAAACCAAACATTGATAACCCAGATCAACCAAATCACGAGATAGATGTGTTAGCTGGGCACGAGAACGATGTTAATTACGTGCAATTTAGTGGATGTGCAGTAGCCTCTAGATTCATTTCACCCGATCCTTCTAAGGAAGATAGTGGTCACAGATTTAAGAATTCATGGTTTACTCATGACAATATAGTTACTTGTTCTCGTGATGGTAGTGCAATTATTTGGGTTCCTAGGTCGCGTAGATCACATGGAAAAGCTGGCCGATGGACTAGGGCTTATCATTTAAAAGTTCCACCCCCACCAATGCCTCCACAACCTACACGAGGAGGTCCTCGTCAAAGAATTCTTCCCACTCCTCGTGGTGTTAATATGATTATTTGGAGCTTAGACAATCGCTTTGTCCTTGCTGCTATAATGGAACAATTTGGTTTTATGATTGAATGGAGTAATGTGAACTTCTTAACATTCCAAATCAGGACTATAATAGAAAACAAATATAATTTGTTTTTATGTCATTTTCTTTGTGATGCAGATTGTAGAATATGTGTTTGGAATGCTTCTGATGGTAGTTTAGTGCACTCTTTGACAGGTCATACAGAATCAACCTACGTTCTTGATGTCCATCCTTTCAATCCTCGGATAGCTATGAGTGCTGGCTATGATGGAAAAACTATAGTTTGGGATATATGGGAAGGAACACCTATTCAGATTTATGACATTTCTCGTTTCAAACTGGTGGATGGAAAGTTCTCATCGGATGGAACATCGATAATTCTTTCCGATGATGTAGGTCAGCTATATATATTAAGTACAGGACAAGGCGAGTCCAAACAGGATGCGAAGTACGACCAGTTCTTCCTTGGTGATTATCGTCCACTTGTTCAAGATACTTTTGGAAATGTAGTTGACCAAGAAACTCAACTTGCTCCTTACAGACGAAATATGCAAGATCTTCTTTGTGACTCAGGCATGATACCTTACCCAGAACCTTACCAGAGCATTTACCAGCAGAGACGGTTAGGATCTCTGGGTATTGAATGGCGTCCTTCTCCTCTGAAGTTTGCTGTTGGGCCTGACTTCAGTTTGGATCCAGTCTATCAGATGCTGCCTTTGGCAGACTTGGATCTGTTGATAGAACCTCTCCCGGAGTTTGTTGATGCCATGTACTGGGAGCCGGAAAATGAAGTGCAAAGTGACACTACTGATTCAGAGTATAATGTCCCAGAAGACTATTATACTGGAGGGGAGCAAGGGAGTTTGAATTCAAATTCGTCCGTAGACCCAGAATGCAGCAGTGAAGACATTGGAGGAGAAGAAGATCAAAGAGACCGCCTTCGTAGATCGAAGAGGAAAAAACACAAGGCAGAAGTAAGTCATTGTCGTGCATTTTTATTGCATCCATTTAAGTCAATCACCAACCTCTGTTTTTACTACATTTTCCAGATGGAGTTCATGTCATTTTCTGGAAGGCGAATTAAAAGGAGGAATTTGGATGAGTCCGATGAACATCCAATCAAAAGTAATAGAAATAGGAAATTAAAAGTTCATCTAAAAACTTCAAAGAAGAAATCGGCATCAAAATCATCAAGGCCTCAAAGAGCTGCTGCAAGGAATGCTCGTCATTTCTTTTCCAAACTAAAAGGAGCATCTATTGATGTAGAGTACGAGGATGGCTCAGTAAGTGATTCATCAGAAAGCGAATCTGTCTTGCAAGATTCAATCATTGAGAGTGGTGAGTCTGATACGTCTTTGGAGAACATAACCAAGCATTCGAAAGGAAAAGAGGTTTACTTGGACGACTCTGAGGATGGAATTCAACCTTTTGAACCTCCAAACTCTCATGTGAATTCTGTAAATAGGGGGAGGTTGATTCTCAAACTTCCAATTAGGAATTTTAATAGACCTGTGCCTCCAGAGGATATAATGCACAAATGTTCAAACACAACCAATGGGGTCAGCTCATCATCAAAAGCTCCTGGGGAAGCTGAAGAAGCTAATCAGAGTCGCACAAACCTCGAGGAACCAAATTACGCACTTGAAGAAGCAGACATTACTGTTGGAGTAGAGGATTTACAAGACAAAATTGAAGGTCATATTAATCACTCTGTACCCAATAAAAATGGCAGCATTAAGTGGGGGGGCTTCAAGATCCGTTCGTCAAAGCGTCTAAAATTGGGAGAAACAGCTACATCTGATGTACAAGCAATAGCTAGTTCTCGCCTTGATGATCGTAATGACATGGAGAGGAGCAACCTCCATGAATATGCAGGACAAGAAAATGATTCTGTCAATGTAATGCAAGATGGGGAAAATTTAAATGAAAAAGTTGAACTTGGTGCTTTTGGAGGAGTTTCTGACCCAGCCATCAACCTGGAGACCACAACTTTTGTCAAGCATGGAGATCATGATGCTGATCGAGGGCTGGATTATCTGGCCATTCCCAACACCTCATCTACCTGGAACGGGACTAATTCCTCTTCTGAGTTGTCTAAGAGCAAGATGCCTGTCTCAACAAAGATAAGGTTGAAGGCAAACATTGATCAAGGAGCTTCTCCGAAGCACGAAAAAAAATCTCTGGTCGTAAGCATGAGTAATGGTAAACATGCAGTGTTGTGTGGAAGTCCTCAGTTTCCAGTAGTTGCCCCTGATGATAGCATTGACGGCTGTAATTTGGACAATAGAAGTGATGGTTCACACGAATATGACATGTTGGCAGATAAGTCATTGCAATCTAATCCAAACAAAATGTACAGTGCAGTCTACAGAAGATTGAAGTCACACAAAAGTAGAACCAGTTTGGAACTCGATGAAAGTGGCTCAGTAGAGTTCTCTTCATATTTATGCAATAATAATTCCTACAATGGAATAGAAGGAAATGAAGGTACAGTTGATTGGGCACGCAGGACTCGGTCAATGAGGTCAAAGGCTTTGATTAATGATTCAAATAATCTGAGTGGCAATCTCAAGTATGAGGAAGACGTAGAGTTGGAACCTATGTCTCGAAATTTAGAGAATACTTCAACGAGCAGATGCCAGTTTAAATACGAAGAGTGGGGATCAAAATCAAGTATAACAGTTGGACTAAGATCTGCTAGGAATAGGAGGGCCAATTATGATCGCGACACAAGTCCAACAGATAGAAGAAAATCTCATCTACTAACAAGAAAAGGATCGTGGTTAATGATGTCTGTTCATGAAGGTGGCTCCCGTTATATTCCCCAGCTTGGGGATGAAGTAGTGTATTTAAGACAGGGTCATCAAGAATATATTGAGTACTGTCGTGCAAGAGAAGTAGGGCCTTGGATTTCAATGAAGGGAAGAACCATAGGAGCTGTGGAATACTGTAAAGTTGTTGAACTTGAGTATTCCACGGTTTCTGGATCTGGGGCTAGCTGCTGCAAGATGACGCTTGAGTTTGTCAATCCTGATTCCAGTGTTTTTAGTGGATCTTTCAAGTTGTCTCTCCCTGAGGAGACTAGTTTCCCAGATTTTCTGGTTGAGAGAAGTCGATTTGAAGCTTCTTTGCAGAGAAATTGGAGATTCAGGGACAAGTGCAAAGTGTGGTGGAGAAATGAGGGTGAAGAAGATGGTAGTTGGTGGGATGGTCGGATAACCGCTGTAGAGGCAAAATCTTCAGAATTTCCTGAAAGTCCTTGGGAGAGATACAGAATTCGGTATAAAAGTGAACCAGCAGACACCCATTTACATAGTCCTTGGGAGCTCTTCGATGACGATACGCATTGGGAACAGCCCCGTGTTGATTATGAGAGTAAAGCCAAGCTGTTATCTGCACTAGACAAGTTAGAGTTAGGTAGTATAGGCCAGGATCGATATGGGGTTCATGAATTGAGACGCGTTTCTCAGCGACCACAGTTTAGGAACCGGTTTCCAGTCCCATTAACTCTCGAAGTGATTCATTTAAGACTCGAGAGCGATTATTATCGGAGTGTGGAGGCTTTGAAGCATGACTTTGAAGTTATGCTGTCAAATTTTGAAGCCTACGCAGCAAAGAATGAGAATTTGTTGAAAAGATTAAAACGACTATCGGAGTGGTTCAATAAAACACTGTCTTCATCGTAG 5388 41.54 MALQKFLPSSDAPSPMKHLSLPGETHKLANSEPNHNVEPDVEIDIREVYFLIMHFLSSGPCQRTYGQLWNELLEHQLLPRRYHAWYSRNGVHCGDENDDGLSFPLSYNKLVERYSHIKKDHLVKLLKQLVLCKTSSSNSTNSGRVPNAADVPTLLGTGSFSLLSYDRDEGINEPSHPLVYMRWPHMKADQVRGLSLRELGGGFSRHQRAPSIRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRLGRYVVTGSDDRLVKIWSMETAYCLASCRGHEFVSSIGTNCLFIIIPFVIFKGDITDLAVSSNNAVVASSSNDFIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPGYQLLSSSDDGTCRIWDARNSLQHNPRIYVPRPLDSVTGRSSGPSSSNVSRNHQIFCCAFNANGTIFVTGSSDTLARVWNACKPNIDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFISPDPSKEDSGHRFKNSWFTHDNIVTCSRDGSAIIWVPRSRRSHGKAGRWTRAYHLKVPPPPMPPQPTRGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMEQFGFMIEWSNVNFLTFQIRTIIENKYNLFLCHFLCDADCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIQIYDISRFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESKQDAKYDQFFLGDYRPLVQDTFGNVVDQETQLAPYRRNMQDLLCDSGMIPYPEPYQSIYQQRRLGSLGIEWRPSPLKFAVGPDFSLDPVYQMLPLADLDLLIEPLPEFVDAMYWEPENEVQSDTTDSEYNVPEDYYTGGEQGSLNSNSSVDPECSSEDIGGEEDQRDRLRRSKRKKHKAEVSHCRAFLLHPFKSITNLCFYYIFQMEFMSFSGRRIKRRNLDESDEHPIKSNRNRKLKVHLKTSKKKSASKSSRPQRAAARNARHFFSKLKGASIDVEYEDGSVSDSSESESVLQDSIIESGESDTSLENITKHSKGKEVYLDDSEDGIQPFEPPNSHVNSVNRGRLILKLPIRNFNRPVPPEDIMHKCSNTTNGVSSSSKAPGEAEEANQSRTNLEEPNYALEEADITVGVEDLQDKIEGHINHSVPNKNGSIKWGGFKIRSSKRLKLGETATSDVQAIASSRLDDRNDMERSNLHEYAGQENDSVNVMQDGENLNEKVELGAFGGVSDPAINLETTTFVKHGDHDADRGLDYLAIPNTSSTWNGTNSSSELSKSKMPVSTKIRLKANIDQGASPKHEKKSLVVSMSNGKHAVLCGSPQFPVVAPDDSIDGCNLDNRSDGSHEYDMLADKSLQSNPNKMYSAVYRRLKSHKSRTSLELDESGSVEFSSYLCNNNSYNGIEGNEGTVDWARRTRSMRSKALINDSNNLSGNLKYEEDVELEPMSRNLENTSTSRCQFKYEEWGSKSSITVGLRSARNRRANYDRDTSPTDRRKSHLLTRKGSWLMMSVHEGGSRYIPQLGDEVVYLRQGHQEYIEYCRAREVGPWISMKGRTIGAVEYCKVVELEYSTVSGSGASCCKMTLEFVNPDSSVFSGSFKLSLPEETSFPDFLVERSRFEASLQRNWRFRDKCKVWWRNEGEEDGSWWDGRITAVEAKSSEFPESPWERYRIRYKSEPADTHLHSPWELFDDDTHWEQPRVDYESKAKLLSALDKLELGSIGQDRYGVHELRRVSQRPQFRNRFPVPLTLEVIHLRLESDYYRSVEALKHDFEVMLSNFEAYAAKNENLLKRLKRLSEWFNKTLSSS 1795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13543041 13565138 - Bpe010392.1 Bpe13g00691 113471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00691 1795 SUPERFAMILY Bromodomain 1724 1793 IPR036427 GO:0005515
Bpe13g00691 1795 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 339 375 - -
Bpe13g00691 1795 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 918 1793 - -
Bpe13g00691 1795 ProSitePatterns Trp-Asp (WD) repeats signature. 359 373 IPR019775 -
Bpe13g00691 1795 Gene3D - 1716 1794 IPR036427 GO:0005515
Bpe13g00691 1795 ProSitePatterns Trp-Asp (WD) repeats signature. 651 665 IPR019775 -
Bpe13g00691 1795 Gene3D - 585 728 IPR015943 GO:0005515
Bpe13g00691 1795 MobiDBLite consensus disorder prediction 934 974 - -
Bpe13g00691 1795 SUPERFAMILY WD40 repeat-like 226 707 IPR036322 GO:0005515
Bpe13g00691 1795 MobiDBLite consensus disorder prediction 831 887 - -
Bpe13g00691 1795 Pfam WD domain, G-beta repeat 407 435 IPR001680 GO:0005515
Bpe13g00691 1795 Pfam WD domain, G-beta repeat 625 664 IPR001680 GO:0005515
Bpe13g00691 1795 Pfam WD domain, G-beta repeat 299 328 IPR001680 GO:0005515
Bpe13g00691 1795 Pfam WD domain, G-beta repeat 230 267 IPR001680 GO:0005515
Bpe13g00691 1795 Pfam WD domain, G-beta repeat 335 372 IPR001680 GO:0005515
Bpe13g00691 1795 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 435 IPR001680 GO:0005515
Bpe13g00691 1795 MobiDBLite consensus disorder prediction 945 964 - -
Bpe13g00691 1795 MobiDBLite consensus disorder prediction 851 866 - -
Bpe13g00691 1795 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 375 IPR001680 GO:0005515
Bpe13g00691 1795 PANTHER WD REPEAT DOMAIN 9 36 576 - -
Bpe13g00691 1795 PANTHER WD REPEAT DOMAIN 9 613 893 - -
Bpe13g00691 1795 MobiDBLite consensus disorder prediction 1 35 - -
Bpe13g00691 1795 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 270 - -
Bpe13g00691 1795 ProSiteProfiles Trp-Asp (WD) repeats profile. 631 673 IPR001680 GO:0005515
Bpe13g00691 1795 SMART WD40_4 624 664 IPR001680 GO:0005515
Bpe13g00691 1795 SMART WD40_4 447 512 IPR001680 GO:0005515
Bpe13g00691 1795 SMART WD40_4 396 435 IPR001680 GO:0005515
Bpe13g00691 1795 SMART WD40_4 287 329 IPR001680 GO:0005515
Bpe13g00691 1795 SMART WD40_4 332 372 IPR001680 GO:0005515
Bpe13g00691 1795 SMART WD40_4 228 267 IPR001680 GO:0005515
Bpe13g00691 1795 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 338 IPR001680 GO:0005515
Bpe13g00691 1795 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Bpe13g00691 1795 ProSiteProfiles Bromodomain profile. 1726 1778 IPR001487 GO:0005515
Bpe13g00691 1795 Gene3D - 400 573 IPR015943 GO:0005515
Bpe13g00691 1795 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 36 576 - -
Bpe13g00691 1795 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 613 893 - -
Bpe13g00691 1795 MobiDBLite consensus disorder prediction 1080 1109 - -
Bpe13g00691 1795 MobiDBLite consensus disorder prediction 993 1015 - -
Bpe13g00691 1795 CDD WD40 231 664 - -
Bpe13g00691 1795 Gene3D - 206 398 IPR015943 GO:0005515
Bpe13g00691 1795 CDD Bromo_WDR9_I_like 1667 1795 - -
Bpe13g00691 1795 MobiDBLite consensus disorder prediction 998 1015 - -
Bpe13g00691 1795 PANTHER WD REPEAT DOMAIN 9 918 1793 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00691 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 2048.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00691 Bpe-Chr13:13543041 Bpe11g00099 Bpe-Chr11:680541 6.79E-13 dispersed
Bpe13g00691 Bpe-Chr13:13543041 Bpe06g00115 Bpe-Chr6:1804140 1.97E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00691 Bpe_Chr13 FPKM 4.617822 5.561805 4.84332 4.910992 0.842748 0.91173 0.832044 9.813912 9.125315 9.822037