Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00693 ATGGAGTTAGATCGTCCGCAATACCTAGAAGAAGATGCATTCCTGGAGTTTGTCGATTACGCAAGGTCTGCGCTTGTGTCTGGTGACGATGAAGGTGACGGTTCCGATGGAAATGGAGCGGACGCCCCGGGTCCAAGTTGGGGCTGGATCGTCTCTTTGATTCTCAAGAGTTGTATTGCTTACTCAAGCGGCGTCACTCCTGCTATTCTACTCTCTGAACTATCCCATTCTTGGAGTGAGCAACACCGAGCTGGAGCTCCAAAAAAAAGACCGGAATGTATCAATCAGTTGAAGCTGAAGCATAGGAGAACGAAGCTTCCAAATACTGTTTCAATTGATTCAATATATGAGAAAAATTTTCTGTCCTTGAGCAGCGTATTGGAAGCTGTGGTTGTTGATGTTTTTATTCTCCCAGGTACGAACATTTATATGCTTACCTTAGGCGATTTTTGGAGCTCGAACACAATTGATTTGTATCTCCATCGAAGTAGGTACTATGACTTAGTAAATCCTCACAATGGAATTCTGAAGAAAGGGAGGGAAATATTTCTCACTGGATGCTATCTCCGGGCTGGCAATGAAGGTCCTGGTCATCCTCGACTTCTACCAACAGAATACCTTGTGTTGTTGTTAGATGAGGAAAAGGATGACGATGCTATATTGCTGGGAGCTCAATTCTGTTCAGATTCCTTCTCTTCCATTTCTCTTGAGGCCATTGATAAAGGAATTTCATTTTCATTCTATGGAAAGATCGAATCTATTGGCTCACTAGAAATTCAAGGACATAATGGCTGCTTACAGAGGAAACAAGTCACCCTTCTTGATAATGATGGCGTTGAACTAAACTTTCTTTTATGGGGCGAACAAGTTCACTTAGCCAATCTTTTGAGCATTGGTAGCATGCTTGCACTGGATAGACCTTACATTACACGCTCCATGGACAGTGCCATTGATTCAAATAATGAATTTTGTCTTGAATATGGTAGTGCATCTCAATTATATTTGGTGCCCTTCATCCAACAGGAAGAACAAATATGTGTAGCATTGACACAAAATGCACATCAAGGATCAAGGTTGCCAGCTACATTGGATCCTAGCCAGGGTCCTAAAGTTTCCCAAGTTTCTTTACCCTGTGATTCACATGGATCAATTGACTTCAGCAGTTATCCTTTTCGATTATTTGTGATAGATCTTCGCGACAAGATGACAAACATGAGTCTTTATGGCGTAATTACGAATATCACAAAAGAAAGAAGTACGGCAGAACTTATCTTTTCTATGAAAATAGAAGATAACACTGGAGCAATTTGGGCAAAGCTACATTTTACTAAATCTTGGTCTCTGGGAAGGGTAAACATTGGTCACACTGTGTATATTACTGGATTGGCTTGCTCTATGAACCAAAAAATTAAACGCTTAGAAGCATTATGGTTTGATACTTTTGTTGGAGCGGCTTTTGCCAACCTTAGTTGTTTGCCAGCATTGCTGAATTCGTCTTGTCTTCATAAGTTATCCAGCCTTACTGCATTATCCAGTAACACTCGCAGCACACAAATATGTCGGGTTTGGCTTGACCAAGTTTCACATTGTCATGTTACTACAAGATTCTCACATTCCCTGTGCGGTCATGCTCTTGAAGAGATGCCTACTGGAAATTTTGAATGCAGCTTCTGTCATTATGAATGTGACGGAGAAATTGTACGGGCTTTCAGTTTAAAAATCACTCTTGCTGATGAAAATGCAAAAGTTTTTGCCACGTGTTCTGGTCAATCTGCTGCTGAACTGCTGCAAATATCTCCAGATGAATTTTACGAACTGCCTGAGGAAGAGCAGATTATGTATCCATCTTCGCTCGAGAATGAAAAGTTCATGGTTGCTATTGTAAATTGTAGAATCCAGATCGATGGGAAAAGTGATAATCTCCAAAGTAACGATGCTCAGTGGGAGGTGACTCGTGCTTTGAAATTTGTATCATCCATCATTGAAAAGATGGAAAATGTTGCTTCTTCAACTTGTATCTTCAGAATACCCGAAGAACTTGCTCACAACAACAGAAAAGTATTTTCCCCGGAGAAGCTATCTATCGGCCCTTTCCACCATGGAAAACCAGACCTCAAATCAATGGAGGATCACAAAGAGATGGAGGGAGATAGGAGAGTCGGAGTGGCGGTTGATTTCTCAGAGTGTAGCAAGAAAGCGCTGAGATGGGCGGTGGATAACGTCGTCCGGAAAGGGGATTATCTTATCCTTGTAACCATTCGCCCGGAAGGAAACTACGAAGACGGCGAGATGCAGCTCTGGGAAGCCACCGGATCTCCATTTATTCCTCTGGGCGACATCTCGGATCCTCGAGTTATGAAGAAGTATGGAGTGAAGCAGGATGCCGAAACCTTGGACATCGTTAGCGCCGTGGCCAAACAAAAAGAGGTAGTGGTGCTTATGAAGATTTACTGGGGAGATGCTCGGGAGAAGATCTGTGAAGCCATTGATAAAACCCCCCTCAGCTGCCTTGTCATTGGGAACAGAGGTCTTGGGAAGATTAAGAGAGCTATACTGGGAAGTGTGAGCAACTACGTTGTGAACAATGCTTCTTGCCCTGTGACTGTCGTCAAAAGTGGAGAGCCGGGCAACTAG 2634 42.82 MELDRPQYLEEDAFLEFVDYARSALVSGDDEGDGSDGNGADAPGPSWGWIVSLILKSCIAYSSGVTPAILLSELSHSWSEQHRAGAPKKRPECINQLKLKHRRTKLPNTVSIDSIYEKNFLSLSSVLEAVVVDVFILPGTNIYMLTLGDFWSSNTIDLYLHRSRYYDLVNPHNGILKKGREIFLTGCYLRAGNEGPGHPRLLPTEYLVLLLDEEKDDDAILLGAQFCSDSFSSISLEAIDKGISFSFYGKIESIGSLEIQGHNGCLQRKQVTLLDNDGVELNFLLWGEQVHLANLLSIGSMLALDRPYITRSMDSAIDSNNEFCLEYGSASQLYLVPFIQQEEQICVALTQNAHQGSRLPATLDPSQGPKVSQVSLPCDSHGSIDFSSYPFRLFVIDLRDKMTNMSLYGVITNITKERSTAELIFSMKIEDNTGAIWAKLHFTKSWSLGRVNIGHTVYITGLACSMNQKIKRLEALWFDTFVGAAFANLSCLPALLNSSCLHKLSSLTALSSNTRSTQICRVWLDQVSHCHVTTRFSHSLCGHALEEMPTGNFECSFCHYECDGEIVRAFSLKITLADENAKVFATCSGQSAAELLQISPDEFYELPEEEQIMYPSSLENEKFMVAIVNCRIQIDGKSDNLQSNDAQWEVTRALKFVSSIIEKMENVASSTCIFRIPEELAHNNRKVFSPEKLSIGPFHHGKPDLKSMEDHKEMEGDRRVGVAVDFSECSKKALRWAVDNVVRKGDYLILVTIRPEGNYEDGEMQLWEATGSPFIPLGDISDPRVMKKYGVKQDAETLDIVSAVAKQKEVVVLMKIYWGDAREKICEAIDKTPLSCLVIGNRGLGKIKRAILGSVSNYVVNNASCPVTVVKSGEPGN 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13572972 13582426 - Bpe010394.1 Bpe13g00693 113473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00693 877 Gene3D HUPs 715 876 IPR014729 -
Bpe13g00693 877 Gene3D - 523 666 IPR012340 -
Bpe13g00693 877 PRINTS Universal stress protein signature 849 871 IPR006015 -
Bpe13g00693 877 PRINTS Universal stress protein signature 831 843 IPR006015 -
Bpe13g00693 877 PRINTS Universal stress protein signature 717 735 IPR006015 -
Bpe13g00693 877 SUPERFAMILY Nucleic acid-binding proteins 537 640 IPR012340 -
Bpe13g00693 877 Pfam Cell division control protein 24, OB domain 3 397 618 IPR035203 -
Bpe13g00693 877 Pfam Cell division control protein 24, OB domain 2 146 277 IPR035200 -
Bpe13g00693 877 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 718 873 - -
Bpe13g00693 877 CDD USP_Like 719 870 - -
Bpe13g00693 877 Pfam Cell division control protein 24, OB domain 1 14 141 IPR035201 -
Bpe13g00693 877 Pfam Plant protein of unknown function 673 715 IPR004158 -
Bpe13g00693 877 Pfam Universal stress protein family 718 871 IPR006016 -
Bpe13g00693 877 PANTHER NUCLEIC ACID-BINDING PROTEINS SUPERFAMILY 13 634 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00693 - - - qsu:111989022 954.125
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01113 Bpe13g00693 CCT
Bpe13g00693 Bpe14g01101 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00088 Bpe-Chr8:483189 Bpe13g00693 Bpe-Chr13:13572972 7.28E-44 dispersed
Bpe08g01149 Bpe-Chr8:13313730 Bpe13g00693 Bpe-Chr13:13572972 2.81E-14 dispersed
Bpe13g00693 Bpe-Chr13:13572972 Bpe14g00490 Bpe-Chr14:4371851 7.10E-18 dispersed
Bpe03g00337 Bpe-Chr3:5673317 Bpe13g00693 Bpe-Chr13:13572972 7.18E-08 transposed
Bpe04g01406 Bpe-Chr4:20742228 Bpe13g00693 Bpe-Chr13:13572972 5.49E-09 transposed
Bpe13g00693 Bpe-Chr13:13572972 Bpe14g01101 Bpe-Chr14:8209770 6.63E-93 wgd
Bpe13g00693 Bpe-Chr13:13572972 Bpe04g01113 Bpe-Chr4:9009885 4.31E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g76 . Blo12g00084 Bda03g01174 . Bpe04g01113 Bpe14g01101 . . . . . Cma14g01591 Car06g01325 Car14g01405 Sed12g0777 Cpe08g00153 Cpe03g01331 Bhi01g01084 Tan10g1071 Cmetu06g1226 . Hepe05g1388 . Lcy11g1343 . . . . . . . Cone14ag0723 Cone15ag0732 . . Lsi05g01588 . . Cme06g00783 Blo02g00478 Blo07g00150 Bda11g00504 Bda13g00215 . Bpe13g00693 . Bma06g01471 . . Cmo14g01623 . . . . . . . . . . . . . Cla05g00701 Cam05g0767 Cec05g0776 Cco05g0769 Clacu05g0757 Cmu05g0723 Cre05g0797 . Csa03g01513 Chy06g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010983 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00693 Bpe_Chr13 FPKM 3.485313 1.867593 0.432658 0.0 0.0 0.0 0.0 1.013785 1.444206 1.488448