Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00697 ATGGCTTCCGGTAGTAACACAGCTCACTCCGATCATCAACAAGGGCAGTCCTCTAACGCAAACACGAGCAACACCGTCGTGCTCCGGTCGGAATCCGTCAGCAAAGCCATAGCGCAGTACACCGTCGATGCTCGTCTCCACGCGGTCTTCGAGCAGTCAGGTAAGTCTGGAAAGTGCTTTGACTACTCCCAGTCTCTGAAAACCTCCACACAATCTGTTCCTGAACAACAAATCACGGCTTACCTTTCCAAGATTCAAAGGGGAGGGCGTATCCAGCCCTTTGGCTGTATGATAGCAGTAGAAGAAGCTAGTTTTCGAGTCATCGCATATAGCGTTAACGCGCGCGAAATGCTAGGCCTCACTCCCCAATCCGTTCCTAACCTCGAAAAGCCAGAAATTCTCACAATCGGTACCGATGTGAGGAGTTTATTCACCCAATCTAGCGTACTTTTACTCGAGAGAGCATTTAGGTCTCGAGAAATCACCTTGTTGAATCCAGTGTGGATTCATTCGAAGAATTCTGGGAAACCATTTTACGCAATTTTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCTAGGACTGAGGATCCTGCCCTGTCGATTGCCGGGGCAGTGCAGTCTCAGAAGCTAGCGGTTCGAGCTATTTCCCTGCTGCAATCACTTCCAGGCGGTGATGTTAAACTCTTGTGTGATACTGTGGTTGATTGTGTTAGAGAGCTTACTGGTTATGATCGAGTTATGGTATTTAAATTCCACGAAGATGAGCATGGAGAAGTTGTTGCAGAAAGCAAGAAGTCGAATTTAGAGCCGTATATTGGATTACACTATCCGGCAACTGACATTCCTCAGGCTTCGAGGTTTCTCTTCAAGCAGAATCGGGTAAGGATGATCGTCGACTGCCATTTGATGCCTGTTCGTGTCATTCAGGATGAAGGATTAGTGCAGCCCTTATGTTTGGTCGGTTCGACTTTAAGAGCTCCTCATGGTTGCCATGCTCAATACATGGCTAATATGGGTTCTGTTGCTTCGTTAGCAATGGCAGTGATTATCAACGGTAGCGATAACGAAACAGGTGGTGGCCGGAACTCGATGAGGCTCTGGGGTTTGGTTGTCTGCCACCATAATTCGGCTCGGTGCATCCCCTTCCCGCTCCGTTATGCTTGCGAGTTTCTAATGCAGGCGTTTGGACTGCAACTGAATATGGAACTCCAGCTGGCCTCGCAGTTATCAGAAAAACATGTTTTGAAAACTCAAACTCTTTTGTGCGAAATGATTCTTCGAGATTCGCCAGCCGGAATTGTTACTCAAAGTCCGAGTATTATGGATTTAGTGAAATGTGACGGGGCAGCTCTTTACTACCAAGGGAAGTGTTATCTACTAGGAGTGACCCCGACTGAAGCCCAAATAAAAGATATCGCAAATTGGTTGTTGGCTTTTCATGGCGATTCGACCGGGCTAAGTACCGACAGCTTAGCCGAGGCTGGCTACCCTGGAGCAGCATTGCTCGGCGATGCGGTTTGTGGAATGGCCGTTGCTTATATCACTAAAAGGGATTTTCTCTTCTGGTTTCGATCTCACACAGCCAAAGAGATCAAGTGGGGTGGAGCAAAGCATCATCCGGATGACAAAGATGACGGTCAGAGAATGCATCCACGCTCTTCGTTCAACGCCTTTCTAGAAGTCGTAAAAAGCCGGAGTTTGCCTTGGGAGAATGCGGAAATGGATGCTATTCATTCGTTGCGGCTTATCCTGCGAGACTCATTCAAAGACACTGAATTCAACAACTCTAAGGCAGTTATAGATGCCGTTCCCAAGGATCTCGAAATGGAAAGGTTGGATGAGCTCAGTTCAGTTGCCAGAGAAATGGTTAGGTTGATTGAAACTGCTACTGCCCCCATTTTTGCTGTAGATGTCAATGGTCGAATAAATGGATGGAACGCGAAGGTTGCAGAGTTGACCGGATTTCCAGTGGAAGAGGCTATGGGTAAATCCTTGGTCCAAGATCTCATATATAAGGAATCTGAAGAAACTGTCGAGAAACTTCTGCAACGAGCTTTGAGAGGTGAAGAAGACAAGAATGTAGAGATAAAATTGAAGATGTTTGGCTCAGAACAACATAAACGGCCCACTTTTGTCGTAGTCAATGCGTGCTCAAGCCGGGATTACACAGACAATGTCGTCGGAGTTTGTTTTGTCGGTCAGGATGTTACCGACCAAAAAGTTGTTATGGATAAGTTCATTAACATACAAGGAGATTACAAGTCTATAATTCACAGTCCGAACCCTTTGATCCCTCCCATATTCGCCTCGGACGACAACACATACTGCTCGGAGTGGAATACTGCTATGGAAAACCTCACTGGCTGGTCAAAAGGGGATATTGTCGGAAAAATGTTGGTTGGGGAGGTCTTTGGTGGTTGTTGTCGGCTCAAGGGTTCAGATGGACTTATGAAATTTATGATTGTCTTACACAACGCCATCGGAGGAAACGATACCGACAAATTTCCGTTTTCATTTTTCGACCGGAACGGCAAATATGTGCAGGCCCTTCTAACCGCAAACAAGAGGGTCGACATGAAGGGTAATATCATTGGAGCTTTCTGCTTCTTACAGATTGTAAGTCCTGAATTACAGCAAGCCCTTAAAGTCCAGAGGTTGCAGGAGAAGAGATGTGTGGCAAGGATGAAAGAGCTTGCCTATATTTGTCAAGAAGTCAAAAATCCTTTTAATGGAATTCGATTTACTCATTCACTTTTGGAAGCTACAGAATTAACTGAAGATCAAAAGCAGTTTTTGGAGATAAGCACTGCTTGCGAGAAGCAGATGTCAAAGATTATGAAAGATGTGGATTTGGAAAGCATCGACGATGGCCCATTGGAGCTCGAGAAGTCGGAATTCTTGCTCGGGAGTGTCATTGATGCTGTTGTTGGCCAAGTAATGATAGCAGTTAGAGAAAGAAACTTGCAGCTAATTCGAGATATTCCGGAAGAAGTAAAAAGTCTCGGAGTTTATGGTGATCAATTCAGAATTCAACAAGTTCTGACTGATTTTCTGTTGAATATGGTGCGATATGCGTCTTCTCCGGATGGTTGGGTTGAGATTCGAGTATGTCCAAGCTTGAAGCAAATCTCAGAGGGACTCACTCTAGTGCATAATGAATTCAGGATTTTGTGCTCGGGCGAAGGACTTCCCCCGGAGTTGGTACAAGACATGTTTCATAGCAGTAGATGGGTGACTCGAGAAGGCCTCGGATTGAGCATATGTCGTAAGATTTTGAAGCTCATGAACGGGCAAGTTCAGTACGTCAGAGAGTTGGAAAACTGTTGCTTCCTAATTATTTTTGAGCTTCCCATGACTTGA 3372 45.52 MASGSNTAHSDHQQGQSSNANTSNTVVLRSESVSKAIAQYTVDARLHAVFEQSGKSGKCFDYSQSLKTSTQSVPEQQITAYLSKIQRGGRIQPFGCMIAVEEASFRVIAYSVNAREMLGLTPQSVPNLEKPEILTIGTDVRSLFTQSSVLLLERAFRSREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISLLQSLPGGDVKLLCDTVVDCVRELTGYDRVMVFKFHEDEHGEVVAESKKSNLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHLMPVRVIQDEGLVQPLCLVGSTLRAPHGCHAQYMANMGSVASLAMAVIINGSDNETGGGRNSMRLWGLVVCHHNSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLKTQTLLCEMILRDSPAGIVTQSPSIMDLVKCDGAALYYQGKCYLLGVTPTEAQIKDIANWLLAFHGDSTGLSTDSLAEAGYPGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPDDKDDGQRMHPRSSFNAFLEVVKSRSLPWENAEMDAIHSLRLILRDSFKDTEFNNSKAVIDAVPKDLEMERLDELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVAELTGFPVEEAMGKSLVQDLIYKESEETVEKLLQRALRGEEDKNVEIKLKMFGSEQHKRPTFVVVNACSSRDYTDNVVGVCFVGQDVTDQKVVMDKFINIQGDYKSIIHSPNPLIPPIFASDDNTYCSEWNTAMENLTGWSKGDIVGKMLVGEVFGGCCRLKGSDGLMKFMIVLHNAIGGNDTDKFPFSFFDRNGKYVQALLTANKRVDMKGNIIGAFCFLQIVSPELQQALKVQRLQEKRCVARMKELAYICQEVKNPFNGIRFTHSLLEATELTEDQKQFLEISTACEKQMSKIMKDVDLESIDDGPLELEKSEFLLGSVIDAVVGQVMIAVRERNLQLIRDIPEEVKSLGVYGDQFRIQQVLTDFLLNMVRYASSPDGWVEIRVCPSLKQISEGLTLVHNEFRILCSGEGLPPELVQDMFHSSRWVTREGLGLSICRKILKLMNGQVQYVRELENCCFLIIFELPMT 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13599291 13603279 + Bpe010398.1 Bpe13g00697 113477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00697 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 873 IPR035965 -
Bpe13g00697 1123 Pfam His Kinase A (phospho-acceptor) domain 901 961 IPR003661 GO:0000155|GO:0007165
Bpe13g00697 1123 ProSiteProfiles Histidine kinase domain profile. 904 1123 IPR005467 -
Bpe13g00697 1123 PANTHER PHYTOCHROME 10 1122 - -
Bpe13g00697 1123 PANTHER TWO-COMPONENT HISTIDINE KINASE 10 1122 - -
Bpe13g00697 1123 CDD HisKA 897 953 IPR003661 GO:0000155|GO:0007165
Bpe13g00697 1123 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Bpe13g00697 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 736 IPR035965 -
Bpe13g00697 1123 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Bpe13g00697 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Bpe13g00697 1123 SMART HisKA_10 897 961 IPR003661 GO:0000155|GO:0007165
Bpe13g00697 1123 PIRSF Phytochrome_conventional 13 1123 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bpe13g00697 1123 SMART gaf_1 229 417 IPR003018 GO:0005515
Bpe13g00697 1123 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 Pfam PAS fold 625 740 IPR013767 GO:0006355
Bpe13g00697 1123 Pfam PAS fold 756 875 IPR013767 GO:0006355
Bpe13g00697 1123 Gene3D - 412 585 IPR043150 -
Bpe13g00697 1123 CDD PAS 633 740 IPR000014 -
Bpe13g00697 1123 CDD HATPase_Phy-like 1008 1120 IPR044767 -
Bpe13g00697 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 972 1118 IPR036890 -
Bpe13g00697 1123 SUPERFAMILY GAF domain-like 209 404 - -
Bpe13g00697 1123 Pfam GAF domain 230 407 IPR003018 GO:0005515
Bpe13g00697 1123 SMART HKATPase_4 1009 1122 IPR003594 -
Bpe13g00697 1123 Gene3D - 210 568 IPR029016 -
Bpe13g00697 1123 Gene3D PAS domain 769 882 - -
Bpe13g00697 1123 Gene3D - 937 1114 IPR036890 -
Bpe13g00697 1123 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Bpe13g00697 1123 Gene3D PAS domain 84 332 - -
Bpe13g00697 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Bpe13g00697 1123 Pfam PAS fold 80 196 IPR013654 GO:0006355
Bpe13g00697 1123 MobiDBLite consensus disorder prediction 1 24 - -
Bpe13g00697 1123 Gene3D PAS domain 615 750 - -
Bpe13g00697 1123 SUPERFAMILY GAF domain-like 415 592 - -
Bpe13g00697 1123 CDD PAS 767 875 IPR000014 -
Bpe13g00697 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Bpe13g00697 1123 Coils Coil 675 695 - -
Bpe13g00697 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1009 1117 IPR003594 -
Bpe13g00697 1123 SMART pas_2 755 825 IPR000014 -
Bpe13g00697 1123 SMART pas_2 624 691 IPR000014 -
Bpe13g00697 1123 TIGRFAM sensory_box: PAS domain S-box protein 629 744 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00697 K12121 PHYB; phytochrome B - zju:107418995 1905.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00798 Bpe13g00697 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00798 Bpe-Chr5:21322307 Bpe13g00697 Bpe-Chr13:13599291 0 dispersed
Bpe07g00650 Bpe-Chr7:13229839 Bpe13g00697 Bpe-Chr13:13599291 0 dispersed
Bpe11g01109 Bpe-Chr11:8295645 Bpe13g00697 Bpe-Chr13:13599291 0 dispersed
Bpe13g00697 Bpe-Chr13:13599291 Bpe13g01088 Bpe-Chr13:16416908 1.17E-13 dispersed
Bpe13g00697 Bpe-Chr13:13599291 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00409 . 493 1672 Histidine Kinase Gene Family AT2G17820 64.9 0.0e+00 1452.6
Bpe15g00478 . 564 1761 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1403.3
Bpe03g00033 . 17 996 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1351.3
Bpe14g00730 . 303 1276 Histidine Kinase Gene Family AT2G01830 52.3 6.5e-276 947.2
Bpe05g00945 . 57 1056 Histidine Kinase Gene Family AT2G01830 50.3 2.2e-263 905.6
Bpe02g00521 . 1 1048 Histidine Kinase Gene Family AT5G10720 53.8 5.4e-279 957.2
Bpe02g01845 . 2 1121 Histidine Kinase Gene Family AT1G09570 77.2 0.0e+00 1759.2
Bpe07g00650 . 12 1119 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1253.0
Bpe05g00798 BCT 34 1122 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1168.3
Bpe13g00697 BCT 29 1120 Histidine Kinase Gene Family AT1G09570 52.9 0.0e+00 1158.3
Bpe02g00962 . 36 1111 Histidine Kinase Gene Family AT1G09570 50.4 6.9e-313 1070.1
Bpe05g00798 BCT 12 1058 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1636.3
Bpe13g00697 BCT 30 1084 Histidine Kinase Gene Family AT2G18790 75.0 0.0e+00 1599.7
Bpe02g00962 . 15 1050 Histidine Kinase Gene Family AT2G18790 61.9 0.0e+00 1279.6
Bpe11g01109 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.4 0.0e+00 1214.5
Bpe07g00650 . 23 1074 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1111.3
Bpe02g01845 . 22 1056 Histidine Kinase Gene Family AT2G18790 51.2 1.4e-308 1055.8
Bpe07g00650 . 10 1115 Histidine Kinase Gene Family AT5G35840 62.3 0.0e+00 1398.6
Bpe13g00697 BCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.4 0.0e+00 1124.4
Bpe05g00798 BCT 37 1118 Histidine Kinase Gene Family AT5G35840 52.2 0.0e+00 1119.4
Bpe02g01845 . 10 1116 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1107.8
Bpe05g00798 BCT 8 1118 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1655.2
Bpe13g00697 BCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.2 0.0e+00 1642.5
Bpe02g00962 . 35 1111 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1305.0
Bpe11g01109 . 20 1107 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1245.0
Bpe07g00650 . 24 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1144.8
Bpe02g00962 . 14 1112 Histidine Kinase Gene Family AT4G18130 63.9 0.0e+00 1396.3
Bpe11g01109 . 14 1108 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1327.0
Bpe05g00798 BCT 37 1119 Histidine Kinase Gene Family AT4G18130 59.1 0.0e+00 1258.8
Bpe13g00697 BCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.2 0.0e+00 1249.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00697 Bpe_Chr13 FPKM 2.204493 1.434133 2.667281 3.270349 0.569644 0.809024 1.082215 0.0 0.0 0.0