Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00697 ATGGCTTCCGGTAGTAACACAGCTCACTCCGATCATCAACAAGGGCAGTCCTCTAACGCAAACACGAGCAACACCGTCGTGCTCCGGTCGGAATCCGTCAGCAAAGCCATAGCGCAGTACACCGTCGATGCTCGTCTCCACGCGGTCTTCGAGCAGTCAGGTAAGTCTGGAAAGTGCTTTGACTACTCCCAGTCTCTGAAAACCTCCACACAATCTGTTCCTGAACAACAAATCACGGCTTACCTTTCCAAGATTCAAAGGGGAGGGCGTATCCAGCCCTTTGGCTGTATGATAGCAGTAGAAGAAGCTAGTTTTCGAGTCATCGCATATAGCGTTAACGCGCGCGAAATGCTAGGCCTCACTCCCCAATCCGTTCCTAACCTCGAAAAGCCAGAAATTCTCACAATCGGTACCGATGTGAGGAGTTTATTCACCCAATCTAGCGTACTTTTACTCGAGAGAGCATTTAGGTCTCGAGAAATCACCTTGTTGAATCCAGTGTGGATTCATTCGAAGAATTCTGGGAAACCATTTTACGCAATTTTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCTAGGACTGAGGATCCTGCCCTGTCGATTGCCGGGGCAGTGCAGTCTCAGAAGCTAGCGGTTCGAGCTATTTCCCTGCTGCAATCACTTCCAGGCGGTGATGTTAAACTCTTGTGTGATACTGTGGTTGATTGTGTTAGAGAGCTTACTGGTTATGATCGAGTTATGGTATTTAAATTCCACGAAGATGAGCATGGAGAAGTTGTTGCAGAAAGCAAGAAGTCGAATTTAGAGCCGTATATTGGATTACACTATCCGGCAACTGACATTCCTCAGGCTTCGAGGTTTCTCTTCAAGCAGAATCGGGTAAGGATGATCGTCGACTGCCATTTGATGCCTGTTCGTGTCATTCAGGATGAAGGATTAGTGCAGCCCTTATGTTTGGTCGGTTCGACTTTAAGAGCTCCTCATGGTTGCCATGCTCAATACATGGCTAATATGGGTTCTGTTGCTTCGTTAGCAATGGCAGTGATTATCAACGGTAGCGATAACGAAACAGGTGGTGGCCGGAACTCGATGAGGCTCTGGGGTTTGGTTGTCTGCCACCATAATTCGGCTCGGTGCATCCCCTTCCCGCTCCGTTATGCTTGCGAGTTTCTAATGCAGGCGTTTGGACTGCAACTGAATATGGAACTCCAGCTGGCCTCGCAGTTATCAGAAAAACATGTTTTGAAAACTCAAACTCTTTTGTGCGAAATGATTCTTCGAGATTCGCCAGCCGGAATTGTTACTCAAAGTCCGAGTATTATGGATTTAGTGAAATGTGACGGGGCAGCTCTTTACTACCAAGGGAAGTGTTATCTACTAGGAGTGACCCCGACTGAAGCCCAAATAAAAGATATCGCAAATTGGTTGTTGGCTTTTCATGGCGATTCGACCGGGCTAAGTACCGACAGCTTAGCCGAGGCTGGCTACCCTGGAGCAGCATTGCTCGGCGATGCGGTTTGTGGAATGGCCGTTGCTTATATCACTAAAAGGGATTTTCTCTTCTGGTTTCGATCTCACACAGCCAAAGAGATCAAGTGGGGTGGAGCAAAGCATCATCCGGATGACAAAGATGACGGTCAGAGAATGCATCCACGCTCTTCGTTCAACGCCTTTCTAGAAGTCGTAAAAAGCCGGAGTTTGCCTTGGGAGAATGCGGAAATGGATGCTATTCATTCGTTGCGGCTTATCCTGCGAGACTCATTCAAAGACACTGAATTCAACAACTCTAAGGCAGTTATAGATGCCGTTCCCAAGGATCTCGAAATGGAAAGGTTGGATGAGCTCAGTTCAGTTGCCAGAGAAATGGTTAGGTTGATTGAAACTGCTACTGCCCCCATTTTTGCTGTAGATGTCAATGGTCGAATAAATGGATGGAACGCGAAGGTTGCAGAGTTGACCGGATTTCCAGTGGAAGAGGCTATGGGTAAATCCTTGGTCCAAGATCTCATATATAAGGAATCTGAAGAAACTGTCGAGAAACTTCTGCAACGAGCTTTGAGAGGTGAAGAAGACAAGAATGTAGAGATAAAATTGAAGATGTTTGGCTCAGAACAACATAAACGGCCCACTTTTGTCGTAGTCAATGCGTGCTCAAGCCGGGATTACACAGACAATGTCGTCGGAGTTTGTTTTGTCGGTCAGGATGTTACCGACCAAAAAGTTGTTATGGATAAGTTCATTAACATACAAGGAGATTACAAGTCTATAATTCACAGTCCGAACCCTTTGATCCCTCCCATATTCGCCTCGGACGACAACACATACTGCTCGGAGTGGAATACTGCTATGGAAAACCTCACTGGCTGGTCAAAAGGGGATATTGTCGGAAAAATGTTGGTTGGGGAGGTCTTTGGTGGTTGTTGTCGGCTCAAGGGTTCAGATGGACTTATGAAATTTATGATTGTCTTACACAACGCCATCGGAGGAAACGATACCGACAAATTTCCGTTTTCATTTTTCGACCGGAACGGCAAATATGTGCAGGCCCTTCTAACCGCAAACAAGAGGGTCGACATGAAGGGTAATATCATTGGAGCTTTCTGCTTCTTACAGATTGTAAGTCCTGAATTACAGCAAGCCCTTAAAGTCCAGAGGTTGCAGGAGAAGAGATGTGTGGCAAGGATGAAAGAGCTTGCCTATATTTGTCAAGAAGTCAAAAATCCTTTTAATGGAATTCGATTTACTCATTCACTTTTGGAAGCTACAGAATTAACTGAAGATCAAAAGCAGTTTTTGGAGATAAGCACTGCTTGCGAGAAGCAGATGTCAAAGATTATGAAAGATGTGGATTTGGAAAGCATCGACGATGGCCCATTGGAGCTCGAGAAGTCGGAATTCTTGCTCGGGAGTGTCATTGATGCTGTTGTTGGCCAAGTAATGATAGCAGTTAGAGAAAGAAACTTGCAGCTAATTCGAGATATTCCGGAAGAAGTAAAAAGTCTCGGAGTTTATGGTGATCAATTCAGAATTCAACAAGTTCTGACTGATTTTCTGTTGAATATGGTGCGATATGCGTCTTCTCCGGATGGTTGGGTTGAGATTCGAGTATGTCCAAGCTTGAAGCAAATCTCAGAGGGACTCACTCTAGTGCATAATGAATTCAGGATTTTGTGCTCGGGCGAAGGACTTCCCCCGGAGTTGGTACAAGACATGTTTCATAGCAGTAGATGGGTGACTCGAGAAGGCCTCGGATTGAGCATATGTCGTAAGATTTTGAAGCTCATGAACGGGCAAGTTCAGTACGTCAGAGAGTTGGAAAACTGTTGCTTCCTAATTATTTTTGAGCTTCCCATGACTTGA 3372 45.52 MASGSNTAHSDHQQGQSSNANTSNTVVLRSESVSKAIAQYTVDARLHAVFEQSGKSGKCFDYSQSLKTSTQSVPEQQITAYLSKIQRGGRIQPFGCMIAVEEASFRVIAYSVNAREMLGLTPQSVPNLEKPEILTIGTDVRSLFTQSSVLLLERAFRSREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISLLQSLPGGDVKLLCDTVVDCVRELTGYDRVMVFKFHEDEHGEVVAESKKSNLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHLMPVRVIQDEGLVQPLCLVGSTLRAPHGCHAQYMANMGSVASLAMAVIINGSDNETGGGRNSMRLWGLVVCHHNSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLKTQTLLCEMILRDSPAGIVTQSPSIMDLVKCDGAALYYQGKCYLLGVTPTEAQIKDIANWLLAFHGDSTGLSTDSLAEAGYPGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPDDKDDGQRMHPRSSFNAFLEVVKSRSLPWENAEMDAIHSLRLILRDSFKDTEFNNSKAVIDAVPKDLEMERLDELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVAELTGFPVEEAMGKSLVQDLIYKESEETVEKLLQRALRGEEDKNVEIKLKMFGSEQHKRPTFVVVNACSSRDYTDNVVGVCFVGQDVTDQKVVMDKFINIQGDYKSIIHSPNPLIPPIFASDDNTYCSEWNTAMENLTGWSKGDIVGKMLVGEVFGGCCRLKGSDGLMKFMIVLHNAIGGNDTDKFPFSFFDRNGKYVQALLTANKRVDMKGNIIGAFCFLQIVSPELQQALKVQRLQEKRCVARMKELAYICQEVKNPFNGIRFTHSLLEATELTEDQKQFLEISTACEKQMSKIMKDVDLESIDDGPLELEKSEFLLGSVIDAVVGQVMIAVRERNLQLIRDIPEEVKSLGVYGDQFRIQQVLTDFLLNMVRYASSPDGWVEIRVCPSLKQISEGLTLVHNEFRILCSGEGLPPELVQDMFHSSRWVTREGLGLSICRKILKLMNGQVQYVRELENCCFLIIFELPMT 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13599291 13603279 + Bpe010398.1 Bpe13g00697 113477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00697 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 873 IPR035965 -
Bpe13g00697 1123 Pfam His Kinase A (phospho-acceptor) domain 901 961 IPR003661 GO:0000155|GO:0007165
Bpe13g00697 1123 ProSiteProfiles Histidine kinase domain profile. 904 1123 IPR005467 -
Bpe13g00697 1123 PANTHER PHYTOCHROME 10 1122 - -
Bpe13g00697 1123 PANTHER TWO-COMPONENT HISTIDINE KINASE 10 1122 - -
Bpe13g00697 1123 CDD HisKA 897 953 IPR003661 GO:0000155|GO:0007165
Bpe13g00697 1123 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Bpe13g00697 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 736 IPR035965 -
Bpe13g00697 1123 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Bpe13g00697 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Bpe13g00697 1123 SMART HisKA_10 897 961 IPR003661 GO:0000155|GO:0007165
Bpe13g00697 1123 PIRSF Phytochrome_conventional 13 1123 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bpe13g00697 1123 SMART gaf_1 229 417 IPR003018 GO:0005515
Bpe13g00697 1123 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Bpe13g00697 1123 Pfam PAS fold 625 740 IPR013767 GO:0006355
Bpe13g00697 1123 Pfam PAS fold 756 875 IPR013767 GO:0006355
Bpe13g00697 1123 Gene3D - 412 585 IPR043150 -
Bpe13g00697 1123 CDD PAS 633 740 IPR000014 -
Bpe13g00697 1123 CDD HATPase_Phy-like 1008 1120 IPR044767 -
Bpe13g00697 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 972 1118 IPR036890 -
Bpe13g00697 1123 SUPERFAMILY GAF domain-like 209 404 - -
Bpe13g00697 1123 Pfam GAF domain 230 407 IPR003018 GO:0005515
Bpe13g00697 1123 SMART HKATPase_4 1009 1122 IPR003594 -
Bpe13g00697 1123 Gene3D - 210 568 IPR029016 -
Bpe13g00697 1123 Gene3D PAS domain 769 882 - -
Bpe13g00697 1123 Gene3D - 937 1114 IPR036890 -
Bpe13g00697 1123 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Bpe13g00697 1123 Gene3D PAS domain 84 332 - -
Bpe13g00697 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Bpe13g00697 1123 Pfam PAS fold 80 196 IPR013654 GO:0006355
Bpe13g00697 1123 MobiDBLite consensus disorder prediction 1 24 - -
Bpe13g00697 1123 Gene3D PAS domain 615 750 - -
Bpe13g00697 1123 SUPERFAMILY GAF domain-like 415 592 - -
Bpe13g00697 1123 CDD PAS 767 875 IPR000014 -
Bpe13g00697 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Bpe13g00697 1123 Coils Coil 675 695 - -
Bpe13g00697 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1009 1117 IPR003594 -
Bpe13g00697 1123 SMART pas_2 755 825 IPR000014 -
Bpe13g00697 1123 SMART pas_2 624 691 IPR000014 -
Bpe13g00697 1123 TIGRFAM sensory_box: PAS domain S-box protein 629 744 IPR000014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe05g00798 Bpe13g00697 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00798 Bpe-Chr5:21322307 Bpe13g00697 Bpe-Chr13:13599291 0 dispersed
Bpe07g00650 Bpe-Chr7:13229839 Bpe13g00697 Bpe-Chr13:13599291 0 dispersed
Bpe11g01109 Bpe-Chr11:8295645 Bpe13g00697 Bpe-Chr13:13599291 0 dispersed
Bpe13g00697 Bpe-Chr13:13599291 Bpe13g01088 Bpe-Chr13:16416908 1.17E-13 dispersed
Bpe13g00697 Bpe-Chr13:13599291 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00697 K12121 - zju:107418995 1905.18