Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00727 ATGGCCGGCCTTGCTCCTCCAGCTACAGCCACTGATACAGTACCTGCACCTAAGATAAATGACGAGAAGGCTGATTACTTGAATCTTCCATGTCCCATTCCATACGAGGAGATTCATCGTGAAGCTCTCATGTCATTAAAGCCAGAGCTTTTTGAAGGGATGCGGTTTGATTTTACCAAAGGACTCAATCAAAAGTTCTCCCTCAGTCACAGTGTGTTCATGGGACCGACAGAAATTCCTTCACAGTCTTCTGAAACTATAAAAATCCCTACAGCACATTACGAGTTTGGTGCCAATTTTATTGATCCAAAGTTGATGCTTTTTGGGAGGTTAATGACTGATGGAAGGCTAAATGCAAGATTAAAGTGTGATTTGAGTGACAATATTATCATGAAGGCCAATGCTCAGCTAACAAATGAACCACATATGTCACATGGCATGGTTAACTTTGATTATAAGGGTATACACCTTTTCCTAGGTGAATATTCTGCCTTTTATGAATCTTTGTTTTATCTGAGGAAAATCAATAAAAATGTAGGAAAAGACTATAGAACTCAGTTTCAAGTTGGGAATGGTGCTTTATTTGGAGCAAATTACGTTCAGAGTGTCTCTCCCCATTTGGCATTGGGCGGTGAAGTGTTTTGGGCTGGTCAACATCGCAAATCTGGTATTGGGTATGGTGCTCGTTACAATGCTGATAAGATGGTTGCCACAGGTCAAGTTGCAAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAGGTATCGGAAAAGGTTTCTTTAGCATCGGATTTTATGTACAATTACATGTCGAAAGATGTGACAGCAAGCTTTGGTTATGATTACATCCTTAGACAGTGCCGTCTCCGAGGGAAGATAGATTCGAGTGGTTGTGTGGCTGCTTTCTTGGAAGAACGACTTAATATGGGTCTTAATTTTATACTTTCTGCAGAGACCAAGGTTAAAGTCTGGATTAATGGCCACGAAGATGAGAGTTTAGTTGGATTGAGTGCAAGATTTGGGGCATTATTGCCTTCTTATGATGACAGCGATCTAAGAGTTCCTGCTATTTTCTCAAATCCACTAAATGGCTGTTCCACATCCTCTCCAAAGTTATCTGGATCTATTGCCTTGTCCTTTCGTGGTGAATGCGACTTCACAGCTAAGGCAGAGGTTGCACAGTCTGGGGGTGCTGCAGCTCTTTTGGTGATAAATGATAATGAAGATCTATACAAGATGGTTTGTCCTGAAAATGATACTGCTCTCAATATTTCGATTCCGGTTGTGATGATCCCAAAGTCCGGGGGAGAAGCTCTTAACAAATCTATAGCCGATGGAAGAAGAGTGAAATTTCTATTATATGCTCCAAAGCGTCCATTGGTGGATTTCTCAGCTATATTCTTATGGATGATGGCTGTTGGAACGATTACATGTGCTTTGTTTTGGTCAGAGGTTATTGATTCAGAGCAAAGTGATGAGCGCTACACTGAGTTGTCACCAAAAGAGTCTTCTAATGCTGCAGCAACAAGTGATGATTTTGACAAGGAAATCCTTGATATAAGCGCAAAGGGGGCTGTAGTTTTTGTCATAACAGCGTCAACTTTTCTGGTTTTACTGTATTTCTTCATGTCTTTGTGGTTTGTCTGGCTGCTGATCATACTCTTCTGCATTGGTGGCATTCAGGTAATTGTGAAACTCTCATGTATTGTATTGATTTATAAGTGGTGA 1728 41.03 MAGLAPPATATDTVPAPKINDEKADYLNLPCPIPYEEIHREALMSLKPELFEGMRFDFTKGLNQKFSLSHSVFMGPTEIPSQSSETIKIPTAHYEFGANFIDPKLMLFGRLMTDGRLNARLKCDLSDNIIMKANAQLTNEPHMSHGMVNFDYKGIHLFLGEYSAFYESLFYLRKINKNVGKDYRTQFQVGNGALFGANYVQSVSPHLALGGEVFWAGQHRKSGIGYGARYNADKMVATGQVASTGMVALSYVQKVSEKVSLASDFMYNYMSKDVTASFGYDYILRQCRLRGKIDSSGCVAAFLEERLNMGLNFILSAETKVKVWINGHEDESLVGLSARFGALLPSYDDSDLRVPAIFSNPLNGCSTSSPKLSGSIALSFRGECDFTAKAEVAQSGGAAALLVINDNEDLYKMVCPENDTALNISIPVVMIPKSGGEALNKSIADGRRVKFLLYAPKRPLVDFSAIFLWMMAVGTITCALFWSEVIDSEQSDERYTELSPKESSNAAATSDDFDKEILDISAKGAVVFVITASTFLVLLYFFMSLWFVWLLIILFCIGGIQVIVKLSCIVLIYKW 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13825440 13834887 - Bpe010424.1 Bpe13g00727 113507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00727 575 CDD Porin3_Tom40 29 318 IPR037930 GO:0005741|GO:0008320|GO:0030150
Bpe13g00727 575 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40-1 179 321 - -
Bpe13g00727 575 Pfam PA domain 363 439 IPR003137 -
Bpe13g00727 575 Gene3D - 359 452 - -
Bpe13g00727 575 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40-1 1 155 - -
Bpe13g00727 575 Gene3D Porin 224 340 IPR023614 -
Bpe13g00727 575 SUPERFAMILY PA domain 346 446 IPR046450 -
Bpe13g00727 575 Pfam Signal peptide peptidase 516 566 IPR007369 GO:0004190|GO:0016021
Bpe13g00727 575 Pfam Eukaryotic porin 180 318 IPR027246 GO:0005741|GO:0055085
Bpe13g00727 575 Pfam Eukaryotic porin 31 156 IPR027246 GO:0005741|GO:0055085
Bpe13g00727 575 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 179 321 IPR037930 GO:0005741|GO:0008320|GO:0030150
Bpe13g00727 575 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 1 155 IPR037930 GO:0005741|GO:0008320|GO:0030150
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00727 K11518 TOM40; mitochondrial import receptor subunit TOM40 - sind:105170487 510.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00727 Bpe-Chr13:13825440 Bpe15g00032 Bpe-Chr15:3895281 6.08E-06 dispersed
Bpe08g01505 Bpe-Chr8:15734841 Bpe13g00727 Bpe-Chr13:13825440 2.11E-58 transposed
Bpe14g00986 Bpe-Chr14:7287907 Bpe13g00727 Bpe-Chr13:13825440 8.81E-52 transposed
Bpe13g00727 Bpe-Chr13:13825440 Bpe14g01049 Bpe-Chr14:7829396 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1100 . . . . . . . . Cmo08g00877 Cmo17g00554 . . . . . . . . . . . . . . Cla08g00393 Cam08g0814 Cec08g0389 Cco08g0484 Clacu08g0523 . Cre08g0354 . . . Cone11ag0637 . . . . Blo02g00439 Blo07g00107 . Bda13g00263 . Bpe13g00727 Bma02g00979 Bma06g01433 . . . Cma08g00905 Cma17g00570 . Car17g00525 Cpe12g00484 . . . . . . . . . . . . . . . Lsi09g01570 . . Cme11g02164
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006290 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00727 Bpe_Chr13 FPKM 0.665468 0.839331 3.71668 3.70269 7.18514 7.22607 8.161152 4.026195 3.390392 2.354063