Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00731 ATGCGCAAGTGGTTGTGTTGTTCATGTCATGTCGAAGAGTCCCACCCTGAAGCTGAAAAAGAGCACCTCAAAAACCCAAGGAATTATGGAGATGGTCGTCTGAAGGGACAAAAGGCACCTGCTCGGGCCAAAGTTGAACCACAAAAGGCCCCACCACCAATACAAGTGCCTGCATTGTCTCTGGCAGAACTGAAAGAAAAGACTGATAATTTTGGGTCCAAAACATTGATTGGAGAAGGATCTTACGGGAGAGTTTATTACGCAACCTTAAATAATGGGAAAACAATGGCAGTAAAAAAGCTTGATGTTTCCTCCGAACCCGACTCGACTGCTGATTTTTTGACCCAGGTGTCTATGGTCTCAAGGCTAAAACATGACAATTTTGTGGAGTTGCTCGGTTATTGTGTCGAAGGAAATCTTCGTATACTCGGATTTGAGTTTGCAACTATGGGTTCTCTACACGATATCTTGCATGGAAGAAAGGGAGTTCAAGGAGCCCAACCAGGGCCTGTGCTTGATTGGTCACAGCGGGTGAGAATAGCAGTCGATGCAGCTAGAGGGTTGGAATATTTGCATGAGAAAGTTCAACCTTCAGCTATACACAGAGATGTTCGATCCAGCAATGTTCTTCTCTTTGACGACTTCAAAGCGAAGATTGCTGATTTTAATCTTTCCAATCAAACTCCTGATATGGCTGCCCGTCTTCATTCTACTCGAGTTTTGGGAACCTTCGGCTATCACGCTCCAGAGTATGCCATGACTGGGCAGTTGACGCAAAAGAGCGATGTGTATAGCTTTGGGGTCGTCTTGCTCGAGCTTCTCACCGGGAGAAAGCCTGTGGATCATACGATGCCTCGTGGACAACAGAGTCTCGTGACTTGGGCAACTCCAAGACTGAGTGAAGACAAAGTAAGGCAATGTGTAGATCCAAAGCTGAAAGGGGAGTATCCCCCAAAAGCCATAGCAAAGCTAGCAGCTGTGGCGGCACTGTGCGTACAGTACGAAGCGGAGTTTCGACCAAACATGAGCATTGTCGTGAAGGCCCTCCAACCGCTCGTGAAACCTCCACCATCCCCAATGCCTGACTCTTGA 1092 47.25 MRKWLCCSCHVEESHPEAEKEHLKNPRNYGDGRLKGQKAPARAKVEPQKAPPPIQVPALSLAELKEKTDNFGSKTLIGEGSYGRVYYATLNNGKTMAVKKLDVSSEPDSTADFLTQVSMVSRLKHDNFVELLGYCVEGNLRILGFEFATMGSLHDILHGRKGVQGAQPGPVLDWSQRVRIAVDAARGLEYLHEKVQPSAIHRDVRSSNVLLFDDFKAKIADFNLSNQTPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVRQCVDPKLKGEYPPKAIAKLAAVAALCVQYEAEFRPNMSIVVKALQPLVKPPPSPMPDS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13876432 13878865 + Bpe010428.1 Bpe13g00731 113511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00731 363 Gene3D Phosphorylase Kinase; domain 1 37 147 - -
Bpe13g00731 363 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 1 354 - -
Bpe13g00731 363 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Bpe13g00731 363 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 354 - -
Bpe13g00731 363 SUPERFAMILY Protein kinase-like (PK-like) 52 349 IPR011009 -
Bpe13g00731 363 Gene3D Transferase(Phosphotransferase) domain 1 149 355 - -
Bpe13g00731 363 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00731 363 Pfam Protein tyrosine and serine/threonine kinase 75 349 IPR001245 GO:0004672|GO:0006468
Bpe13g00731 363 PIRSF ILK 9 355 - -
Bpe13g00731 363 MobiDBLite consensus disorder prediction 15 52 - -
Bpe13g00731 363 MobiDBLite consensus disorder prediction 15 42 - -
Bpe13g00731 363 SMART tyrkin_6 71 349 IPR020635 GO:0004713|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00731 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - gmx:548003 630.172
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00731 Bpe14g01077 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01097 Bpe-Chr5:23390222 Bpe13g00731 Bpe-Chr13:13876432 0 dispersed
Bpe06g00604 Bpe-Chr6:16880210 Bpe13g00731 Bpe-Chr13:13876432 7.07E-161 dispersed
Bpe13g00714 Bpe-Chr13:13690340 Bpe13g00731 Bpe-Chr13:13876432 2.79E-143 dispersed
Bpe13g00731 Bpe-Chr13:13876432 Bpe14g01077 Bpe-Chr14:8064746 4.29E-156 dispersed
Bpe13g00731 Bpe-Chr13:13876432 Bpe04g00573 Bpe-Chr4:3640298 3.95E-173 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g252 . . . . . Bpe14g01077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00096 Bda11g00468 . . Bpe13g00731 Bma02g00954 Bma06g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63674 PF07714 PK_Tyr_Ser-Thr 2.00E-46 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00731 Bpe_Chr13 FPKM 5.548038 5.566426 2.42072 2.054466 15.801864 15.611591 17.423231 2.601657 2.423046 3.077894