Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00735 TATGCGTTGCAGGATATTCATGGGAGTGATGTAAGTTTGAGTCAATACAGAGGGAAAGTTGTTCTGATTCTGAATGTTGCTTCACAATGTGGTTTTACGCAATCAAACTACAAGGAACTAAATGTCTTGTACGAAAAATACAAAGACCAAGGTTTTGAGATATTGGCATTTCCTTGCAATCAGTTTGGACGACAAGAGCCAGGAAGCAATGAGAAAATCAAGGATACTGTATGCACAATGTTTAAAGCAAAGTTCCCTATATTTGGCAAGATCGATGTGAATGGGAAGAACGCTGCACCGATTTACCAGTATCTAAAATCACAGAAAGGGGGATATTTTGGAGATAGTATTAAGTGGAACTTCACAAAGTTTTTGATAAATAAAGAAGGGAAAGTTGTAGAAAGATACTCACCAACCACTTCCCCTTTTCAAATCGAGGTTAGTTTATTTTCCCTTGTCATGTTTGAT 468 37.18 YALQDIHGSDVSLSQYRGKVVLILNVASQCGFTQSNYKELNVLYEKYKDQGFEILAFPCNQFGRQEPGSNEKIKDTVCTMFKAKFPIFGKIDVNGKNAAPIYQYLKSQKGGYFGDSIKWNFTKFLINKEGKVVERYSPTTSPFQIEVSLFSLVMFD 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13917840 13919311 + Bpe025238 Bpe13g00735 113515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00735 156 PANTHER GLUTATHIONE PEROXIDASE 2-RELATED 2 151 - -
Bpe13g00735 156 ProSiteProfiles Thioredoxin domain profile. 1 154 IPR013766 -
Bpe13g00735 156 CDD GSH_Peroxidase 1 146 IPR000889 GO:0004602|GO:0006979
Bpe13g00735 156 PIRSF Glutathion_perox 1 154 IPR000889 GO:0004602|GO:0006979
Bpe13g00735 156 SUPERFAMILY Thioredoxin-like 2 146 IPR036249 -
Bpe13g00735 156 Gene3D Glutaredoxin 1 154 - -
Bpe13g00735 156 PRINTS Glutathione peroxidase family signature 52 68 IPR000889 GO:0004602|GO:0006979
Bpe13g00735 156 PRINTS Glutathione peroxidase family signature 16 33 IPR000889 GO:0004602|GO:0006979
Bpe13g00735 156 PRINTS Glutathione peroxidase family signature 117 126 IPR000889 GO:0004602|GO:0006979
Bpe13g00735 156 Pfam Glutathione peroxidase 3 106 IPR000889 GO:0004602|GO:0006979
Bpe13g00735 156 ProSiteProfiles Glutathione peroxidase profile. 1 156 IPR000889 GO:0004602|GO:0006979
Bpe13g00735 156 ProSitePatterns Glutathione peroxidases signature 2. 55 62 IPR029760 -
Bpe13g00735 156 PANTHER GLUTATHIONE PEROXIDASE 2 151 IPR000889 GO:0004602|GO:0006979
Bpe13g00735 156 ProSitePatterns Glutathione peroxidases active site. 18 33 IPR029759 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00735 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - pop:7491769 255.758
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00735 Bpe14g01042 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00735 Bpe-Chr13:13917840 Bpe14g01042 Bpe-Chr14:7795068 1.46E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1191 . . . . . Bpe14g01042 . . . . Cma06g01662 . Car06g01405 . . . . . . . . . . . . . . . . . . Cone14ag0577 . . . . . . Cme07g01902 . Blo07g00091 Bda11g00464 . . Bpe13g00735 . Bma06g01422 . Cmo06g01657 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00735 Bpe_Chr13 FPKM 138.772858 139.133011 0.989838 0.257345 0.803002 0.329827 0.514796 0.0 0.178514 0.157462