Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00739 ATGAATTACTTCCGAGCTGTTTATCTGGCCGATGAGCGTTCGCCTCGCTCTCTTTTGCTCACCGAGGAAGCCATTAGCATGAATGCTGGAAATTACACTGTTTGGCATTTCAGACGTTCGGTCCTTGAGGCTCTCAATGCTGACTTGCGCCAGGAGATGCGTTACATTGAACAGATTGCGGAGATAAACTCCAAAAACTATCAGATTTGGCATCATAGACGATGGGTTGCTGAAAAACTTGGGGATGATGTTCAAATTGAGGAACTTGAATTCACAAAGAAGATTCTTGAAGTTGATGCTAAAAATTATCATGCCTGGTCACATAGGCAGTGGGTTCTTCAGGCACTAGGAGGGTGGGAAGACGAACTCGACTATTGTAAGCAGCTTCTTGAGGAAGATATATATAACAACTCTGCTTGGAATCAGGCAAGTATTAGATATTTTGTAATAACAAGATCTCCTTTCCTAGGAGGCCTGAAAGCCATGAGAGAATCTGAAGTGAGTTATACTGTTGACGCCATCATCTCTCATCCCGATAACGAGAGCCCATGGAGATACTTGCGGGGGCTTTTCAAAGACGACACAGAATCTTGGGTAAACAATGAAGAAGTTTCTTCAGTTTGCTTAAAAGTTATAAGTGGTAAAAGAAGCTATGTGTTCGCTCTTAGCATGCTTTTGGATCTTCTTTGTCATGGTTTCCAACCAAGCCAAGAGTTCAAAGACCCGGTAAATGCTTTAAGGACTTCACCCATCGATGTTCAACAAGATTCCAACTTTGCCGCGACCATTTGCTCGGTCTTGGAAAATGTGGATCCGATCAGATGTAACTATTGGAAGTGGCGCAAAAGCAGAGCCGTCGGTGGTAACTTATAG 873 43.3 MNYFRAVYLADERSPRSLLLTEEAISMNAGNYTVWHFRRSVLEALNADLRQEMRYIEQIAEINSKNYQIWHHRRWVAEKLGDDVQIEELEFTKKILEVDAKNYHAWSHRQWVLQALGGWEDELDYCKQLLEEDIYNNSAWNQASIRYFVITRSPFLGGLKAMRESEVSYTVDAIISHPDNESPWRYLRGLFKDDTESWVNNEEVSSVCLKVISGKRSYVFALSMLLDLLCHGFQPSQEFKDPVNALRTSPIDVQQDSNFAATICSVLENVDPIRCNYWKWRKSRAVGGNL 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13943692 13947737 - Bpe010434.1 Bpe13g00739 113519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00739 290 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 48 82 IPR002088 GO:0008318|GO:0018342
Bpe13g00739 290 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 284 - -
Bpe13g00739 290 PANTHER PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE-1 SUBUNIT ALPHA 1 284 - -
Bpe13g00739 290 Pfam Protein prenyltransferase alpha subunit repeat 164 191 IPR002088 GO:0008318|GO:0018342
Bpe13g00739 290 Pfam Protein prenyltransferase alpha subunit repeat 119 142 IPR002088 GO:0008318|GO:0018342
Bpe13g00739 290 Pfam Protein prenyltransferase alpha subunit repeat 49 79 IPR002088 GO:0008318|GO:0018342
Bpe13g00739 290 Pfam Protein prenyltransferase alpha subunit repeat 87 115 IPR002088 GO:0008318|GO:0018342
Bpe13g00739 290 Pfam Protein prenyltransferase alpha subunit repeat 18 44 IPR002088 GO:0008318|GO:0018342
Bpe13g00739 290 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 119 155 IPR002088 GO:0008318|GO:0018342
Bpe13g00739 290 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 84 118 IPR002088 GO:0008318|GO:0018342
Bpe13g00739 290 Gene3D Protein prenylyltransferase 1 287 - -
Bpe13g00739 290 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 162 196 IPR002088 GO:0008318|GO:0018342
Bpe13g00739 290 SUPERFAMILY Protein prenylyltransferase 1 282 - -
Bpe13g00739 290 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 13 47 IPR002088 GO:0008318|GO:0018342
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00739 K05955 FNTA; protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [EC:2.5.1.58 2.5.1.59] - csin:114285878 441.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00417 Bpe-Chr4:2689333 Bpe13g00739 Bpe-Chr13:13943692 2.75E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1200 . . . . . . . . . . . Cma14g01470 . . Sed05g1558 . . Bhi01g02690 Tan10g1287 Cmetu04g0591 . Hepe05g1229 . Lcy11g1142 . . . . . . . . . . . . . . . . Blo07g00087 Bda11g00457 . . Bpe13g00739 . . . . Cmo14g01509 . . . . . . . . . . . . . Cla07g01486 Cam07g1582 Cec07g1682 Cco07g1643 Clacu07g1573 Cmu07g1541 Cre07g1918 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008182 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00739 Bpe_Chr13 FPKM 0.489583 0.948854 1.014438 1.503457 1.725101 1.397094 1.52532 1.473486 1.53197 1.736073