Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00740 ATGTATCCCAAACGATCCAGCCAAGGAGATGGGTCTGCTTCCCTACCGGTTCGGACTAGTGACAGACTTAGAAGAAGGCCAAACGTGTATGGTCGTGGTAGTACATATATATATTACGAAAAAAGCATCAGGCACACCAAGAAAAGGAAGACAAAAACACCAGCTTCCAGAATCGCCAAATTGATGAGTTCTGGGGGTCAACCAATGCGGAATTTAGATAATCATTTAGGAGATACCAATCTACGCCGTTCTACAAGACAGAGGAGGATACCTGCAAATTATGGAAGTTTTACAGATAGTTCTGGTTCGGAAGATGAAGATTTAATGAGACCTGCCTATCCAAAGCTGAGGAAACAAATCAATAACAACATTGTGCGAGATGGTTTGGCTTCTCCAAAGCATAAAAATACATTGGATAATAATAAACGCACTCCTCGACGAGAAGGACTTCGACCTCGTCGTTCAAAAATAGTAGTTGGGGAACAACTAAGTTTGGAATCTGACGGTGAGCAAGATACTTCAGAAGAGAAGGTTGACCACGATGAAACTGAAAATGTGAATGATATGGAGGATAATGATGGAGATGATGGTCAAAATGAAGAAGAATGCGAGGATGAGGATGAGGATGAGGATGAGGATGAGGGTGAAGCAGATGGTGATGATGAAGATGGTGAAGAGCAAGAGGAGGGAAGGAGACGATATGATCTTCGTAATCGTGCAGACGTGCGCAGGCTATCTATGGAAGAAGGTAAGGGAAGACCAAGGTCTCCTCGCAGGGTTTTGCATCAAGGTATGGGATTGAAAGTTGGCAGAGAAATTCGTAAGGGTGGATCAAGAGTTCACAAGCGTCATCGTCTACAAAGGGTTGAAGATTCTGATGATTCTCTTTTAGTGGATGAGCTAGACCAAGCTCCTTCCATTCCATGGGGGCGAAGCGGGAGCAGATCTGGACCACCTTGGCTCTTTGGGGGATTAGATATTCAAAGTACAACTGCATGGGGATTGAATATTGCTGCTTCTGGTTGGGGTCATCAGAGTGATGCTTTCTCTTCCCTGACTTCTGGAATTCAAACTGCTGGTCCAAGTTCAAAAGGAGGGGCAGATATCCAACCATTACAGGTTGATGAAAGTGTCAGTTTCAATGATATAGGTGGTCTTTCTGAATACATCGATGCTTTAAAAGAAATGGTTTTCTTTCCCCTCTTATATCCTGATTTCTTTTCAAGTTATCACATCACTCCTCCAAGAGGGGTATTATTATGTGGTCCTCCCGGTACAGGGAAAACACTTATTGCGAGGGCTCTTGCATGTGCTGCATCCAAGGCTGGCCAGAAGGTCAGTTTTTACATGCGCAAGGGTGCTGATGTTCTTAGTAAATGGGTTGGTGAGGCTGAAAGACAATTGAAACTATTATTTGAGGAAGCGCAAAAGAATCAGCCTTCCATCATATTTTTTGATGAAATTGATGGACTTGCTCCAGTAAGGTCCAGCAAACAAGAGCAAATTCATAATTCTATAGTTTCTACTTTACTAGCGTTGATGGATGGTCTTGACTCTCGTGGACAAGTAGTATTAATTGGTGCTACCAATCGAATTGATGCTATTGATGGAGCTTTACGTCGTCCTGGTCGATTTGATCGTGAATTTAACTTTCCTTTGCCTGGTTGTGATGCACGTGCTGAAATATTGGACATTCATACACGAAAATGGAAACATTCTCCTTCAAAGGACCTTAGACTAGAACTTGCAGCAACATGTGTCGGATATTGCGGTGCTGATTTGAAAGCATTATGCACTGAAGCTGCAATTCGTGCATTTCGTGAAAAATATCCTCAAGTTTATACGAGTGATGACAAATTTCTGATAGATGTTGATTCTGTGAAGGTTGAAAAGTATCATTTTGTGGAAGCGATGTCAACAATAACTCCTGCTGCACATAGAGGCACTGTTGTTCATTCCAGGCCTCTGTCTTTGGTTGTTGCACCATGTTTAAAATCCCATCTCCAGAAGACCATGAATTTTATATTTGATGTATTTCCTCCTGTTGGGATGTCTTCAGAATTAGCAAAACTTTCTTTCCTTTCTTATGGTTCAGCAATTCCTCTGGTGTACAGGCCTCGGCTTCTCCTCTGTGGAAGTGAAAGTGTTGGGCTGGATCATCTTGGACCCGCTGTTTTGCATGAATTGGAGAAGTTTCCCGTTCATTCATTAGGACTCCCTTCGTTGCTTTCGGATCCTAGTGCAAAGACTCCTGAGGAAGCCTTGGTACACATATTTGGTGAAGCAAGAAGGACAACGCCATCAATACTGTACTTACCTCAGTTCCACCATTGGTGGGAGACTGCAGATGAACAACTTAGGGCAGTTCTGCTATCATTATTAGAAGAACTACCATCTGATCTACCGATATTATTGCTTGGAACATCTTCTTCTACAGTTGTTGAAATTGATGAGAAAGCTTCTTTTGTATTTCCTCGTAGTTGCATCTATAAAGTCGATCCACCATCTAAAGAAGACAGGTCCCTGTTTTTTGATAGTTTAATTGAAGCTGCTTTTTCAGTCTTGGTGGAGAGCATGGCAAAAAACTCCCAAGAGTCAACGTCCCTTCCTCAACTTCCTAAGGCTCCTAAAGTAGAAAGTGGTCCAAAGGCCTCTGAGTTAAGAGCTAAGGTAGAAGCTGAACAGCATGCCCTTCGCCGAATGCGGATGTGTCTCAGAGATGTTTGCAACAGGATTTTGTATGATAAACGATTTAGCGTATTCCATTATCCAGTCTTAGATGAAGATGCTCCAAACTATCGCTTGGTTATTCAAAATCCCATGGATGTTGCTACTTTACTGCAGCGAGTTGACTCTGGGCTATACATTACATCTTCAGCATTCATGCAAGATGTAGATCTTATTGTTTCTAATGCAAAGGCTTATAATGGAGATGATTACAACGGTGCTAGGATCGTCAGTAGAGCTTATGAGCTTCGAGATGCAGTGCAAGGAATGCTGTCACAGATGGATCCTGGGCTAGTCACAATCTGTGACAAGATTGTTGTTCAAGGAGGTCCTCTGCCCATTCCTGCTGATTTAGTGGGATCACCTTTCACATTAGCTCCAGTTGCGCAGCTGGGTACTGTCACTAGGGCGAGTGCACGCCTTCGTAATGTTCAACCAGAAGTTAATATGGGTCAAAACTATGAGGCACTGAAACGACCTAAGAAGAATGTTGATTCTGCACATCATGCAGTTGGAGAAGATAAGCTGCGGAATCAAGACTCATCACCACCAAAGGCAACTCAAGAACCTGAGACCAATGAAGCAAATCCAGCAACGGCCGAACCCGAACCCATTTTGGTCGACGATAATAACAACTCAACCTGCAGAGAGGCTCCTGATCCTGCTGATGCAAATGGGCCCCGTGATTTGATGATGTTAGATGGTGATATTTCTGGCCAGATTGAATCTCTGAAGCAGTTATTTATGGGAAGAACTGAAAACTATGGAATTCCACAGCTTGAGAGGGTCTACACGAGAATCATGAAGGGAGTTTTCGAATCCAAAGGCACAAAGAAGGATGACATGAAGCCTTCGATTTTGAAGTTTTTGTTTAAATTTGCAGAGGAAAGAAATTTCTGA 3627 42.82 MYPKRSSQGDGSASLPVRTSDRLRRRPNVYGRGSTYIYYEKSIRHTKKRKTKTPASRIAKLMSSGGQPMRNLDNHLGDTNLRRSTRQRRIPANYGSFTDSSGSEDEDLMRPAYPKLRKQINNNIVRDGLASPKHKNTLDNNKRTPRREGLRPRRSKIVVGEQLSLESDGEQDTSEEKVDHDETENVNDMEDNDGDDGQNEEECEDEDEDEDEDEGEADGDDEDGEEQEEGRRRYDLRNRADVRRLSMEEGKGRPRSPRRVLHQGMGLKVGREIRKGGSRVHKRHRLQRVEDSDDSLLVDELDQAPSIPWGRSGSRSGPPWLFGGLDIQSTTAWGLNIAASGWGHQSDAFSSLTSGIQTAGPSSKGGADIQPLQVDESVSFNDIGGLSEYIDALKEMVFFPLLYPDFFSSYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQKNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILDIHTRKWKHSPSKDLRLELAATCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVKVEKYHFVEAMSTITPAAHRGTVVHSRPLSLVVAPCLKSHLQKTMNFIFDVFPPVGMSSELAKLSFLSYGSAIPLVYRPRLLLCGSESVGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHHWWETADEQLRAVLLSLLEELPSDLPILLLGTSSSTVVEIDEKASFVFPRSCIYKVDPPSKEDRSLFFDSLIEAAFSVLVESMAKNSQESTSLPQLPKAPKVESGPKASELRAKVEAEQHALRRMRMCLRDVCNRILYDKRFSVFHYPVLDEDAPNYRLVIQNPMDVATLLQRVDSGLYITSSAFMQDVDLIVSNAKAYNGDDYNGARIVSRAYELRDAVQGMLSQMDPGLVTICDKIVVQGGPLPIPADLVGSPFTLAPVAQLGTVTRASARLRNVQPEVNMGQNYEALKRPKKNVDSAHHAVGEDKLRNQDSSPPKATQEPETNEANPATAEPEPILVDDNNNSTCREAPDPADANGPRDLMMLDGDISGQIESLKQLFMGRTENYGIPQLERVYTRIMKGVFESKGTKKDDMKPSILKFLFKFAEERNF 1208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13965113 13973412 - Bpe010435.1 Bpe13g00740 113520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 63 108 - -
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 1060 1136 - -
Bpe13g00740 1208 ProSiteProfiles Bromodomain profile. 921 983 IPR001487 GO:0005515
Bpe13g00740 1208 SUPERFAMILY Bromodomain 887 1008 IPR036427 GO:0005515
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 185 225 - -
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 86 102 - -
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 124 237 - -
Bpe13g00740 1208 ProSitePatterns AAA-protein family signature. 523 541 IPR003960 GO:0005524|GO:0016887
Bpe13g00740 1208 Gene3D - 890 1016 IPR036427 GO:0005515
Bpe13g00740 1208 Pfam Bromodomain 910 979 IPR001487 GO:0005515
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 1 27 - -
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 170 184 - -
Bpe13g00740 1208 Pfam ATPase family associated with various cellular activities (AAA) 418 553 IPR003959 GO:0005524|GO:0016887
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 1090 1104 - -
Bpe13g00740 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 642 IPR027417 -
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 1067 1089 - -
Bpe13g00740 1208 SMART bromo_6 898 1005 IPR001487 GO:0005515
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 1 15 - -
Bpe13g00740 1208 PANTHER BNAC08G44480D PROTEIN 1 1206 - -
Bpe13g00740 1208 SMART AAA_5 414 555 IPR003593 -
Bpe13g00740 1208 Gene3D - 376 646 IPR027417 -
Bpe13g00740 1208 PRINTS Bromodomain signature 946 964 IPR001487 GO:0005515
Bpe13g00740 1208 PRINTS Bromodomain signature 964 983 IPR001487 GO:0005515
Bpe13g00740 1208 PRINTS Bromodomain signature 930 946 IPR001487 GO:0005515
Bpe13g00740 1208 CDD AAA 414 553 - -
Bpe13g00740 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 915 IPR027417 -
Bpe13g00740 1208 Pfam AAA+ lid domain 581 617 IPR041569 -
Bpe13g00740 1208 PANTHER AAA DOMAIN-CONTAINING 1 1206 IPR045199 -
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 132 155 - -
Bpe13g00740 1208 CDD Bromo_AAA 898 1008 - -
Bpe13g00740 1208 Gene3D - 554 639 - -
Bpe13g00740 1208 MobiDBLite consensus disorder prediction 865 886 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00740 K22531 ATAD2; ATPase family AAA domain-containing protein 2 [EC:3.6.1.-] - tcc:18602557 1709.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00245 Bpe-Chr9:1783051 Bpe13g00740 Bpe-Chr13:13965113 4.77E-80 dispersed
Bpe13g00740 Bpe-Chr13:13965113 Bpe06g00666 Bpe-Chr6:17353288 9.22E-51 dispersed
Bpe13g00740 Bpe-Chr13:13965113 Bpe01g00206 Bpe-Chr1:1256816 8.77E-42 transposed
Bpe13g00740 Bpe-Chr13:13965113 Bpe02g00783 Bpe-Chr2:5647615 6.26E-41 transposed
Bpe13g00740 Bpe-Chr13:13965113 Bpe04g00687 Bpe-Chr4:4402373 2.32E-39 transposed
Bpe13g00740 Bpe-Chr13:13965113 Bpe08g00168 Bpe-Chr8:932332 1.47E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00740 Bpe_Chr13 FPKM 3.120721 2.262234 96.223755 90.819954 531.485168 544.119263 503.671112 17.904417 17.619892 16.41062