Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00750 ATGTCAGCAGCTGTAGGAGCTCTCTCGGCAACCAACAATGGCAGCTTCAGCCCTCCAATGGAGGAGCAGATGAAGAAGTCTGGCCTAGATAACCAAAACCAGCTTCATTGTATCCATGATGATTCAGATGAAGAAGAAGACGACGACTCCAAACTCAGTCCTGAAAAGGAATTAGATCTTGGGCCTCAGTTCTCTCTAAAAGAGCAGCTCGAGAAAGATAAGGATGATGAAAGCTTGAGGAAATGGAAGGAACAGCTTCTTGGGAGTGTTGACCTTTCCAAAATTGGAGAAAACAAAGAGCCAGAAGTGAAAATACAAAGTCTCAAAATCCTACGCCATGGCATGTCTGATCTTCTTCTTCCAATTCCCTTCCCCAAAGACACCAAAAAACCACTCTTTATCCTCAAAGAAGGGTCCCGGTACCGGCTAGAATTCGCCTTCGAAGTCGCCGGAAACCTCGTCTCCGGCCTCCGGTACAAAAACAGCGTCTGGAAGACTGGAATAAGAGGTATGATATTTGATTATATTAATTCTATTAATATAATCAATAATAAAATTAATGGTTTTTCACTTGCAGTGGATCATTCAAAGAGAATGATGGGAAGCTTCAGCCCTCAGCAACAGCCTTACACGTTCATAATGGAGGAAGAAACCACCCCTTCTGGTATTTTTGCCAGGGGTTCTTACTCTGCTAGAACCAAGTTTGTTGATGATGATGGGAAATGCTATTTGGACGAGAGCTACTCCTTTGAAATCCAGAAGAATTGGCCTACTACTTCTACTTAA 786 43.0 MSAAVGALSATNNGSFSPPMEEQMKKSGLDNQNQLHCIHDDSDEEEDDDSKLSPEKELDLGPQFSLKEQLEKDKDDESLRKWKEQLLGSVDLSKIGENKEPEVKIQSLKILRHGMSDLLLPIPFPKDTKKPLFILKEGSRYRLEFAFEVAGNLVSGLRYKNSVWKTGIRGMIFDYINSINIINNKINGFSLAVDHSKRMMGSFSPQQQPYTFIMEEETTPSGIFARGSYSARTKFVDDDGKCYLDESYSFEIQKNWPTTST 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14033470 14034895 - Bpe010443.1 Bpe13g00750 113530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00750 261 MobiDBLite consensus disorder prediction 1 72 - -
Bpe13g00750 261 MobiDBLite consensus disorder prediction 1 35 - -
Bpe13g00750 261 PANTHER RHO PROTEIN GDP-DISSOCIATION INHIBITOR-RELATED 11 169 - -
Bpe13g00750 261 PANTHER RHO GDP-DISSOCIATION INHIBITOR 11 169 IPR000406 GO:0005094|GO:0005737
Bpe13g00750 261 Gene3D Coagulation Factor XIII, subunit A, domain 1 55 258 IPR024792 -
Bpe13g00750 261 Pfam RHO protein GDP dissociation inhibitor 44 169 IPR000406 GO:0005094|GO:0005737
Bpe13g00750 261 Pfam RHO protein GDP dissociation inhibitor 185 255 IPR000406 GO:0005094|GO:0005737
Bpe13g00750 261 PANTHER RHO PROTEIN GDP-DISSOCIATION INHIBITOR-RELATED 187 258 - -
Bpe13g00750 261 SUPERFAMILY E set domains 43 257 IPR014756 -
Bpe13g00750 261 PANTHER RHO GDP-DISSOCIATION INHIBITOR 187 258 IPR000406 GO:0005094|GO:0005737
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00750 K12462 ARHGDI, RHOGDI; Rho GDP-dissociation inhibitor - jre:108987310 289.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00190 Bpe-Chr12:1487811 Bpe13g00750 Bpe-Chr13:14033470 2.91E-67 dispersed
Bpe13g00750 Bpe-Chr13:14033470 Bpe15g00742 Bpe-Chr15:17866678 1.61E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe13g00750 . . . . . . . . . . . . . . . . . . Cla07g01471 Cam07g1571 Cec07g1670 Cco07g1631 Clacu07g1562 Cmu07g1530 Cre07g1906 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012234 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00750 Bpe_Chr13 FPKM 0.0 0.0 0.000086 0.0 0.120012 0.089714 0.037224 0.0 0.0 0.0