Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00751 ATGTCGATTTTCTCTCCTTCGCTTCAATCCGTTGCCGGCATCTATTTTCTCCCCAACTTCTCTTCTGCTACTTCCTCTCTCTCTCCTTCTGTTCCTTTCTTTGTTTCTCCTAAGTTTCCGTCCAGAAGACCGTTTAATTTCGCCGCTAGAGTGTCTCTCTCTGGAAGCCCCGACCAAGCGGTTCCTACTGAAGTAATTGACGGATCGTCTCTCTCGCCGGATACTCTTCGACAGGCTCGGAGATCTGCTGCTTGGAAGGCAGCCAAGGCGTATCTTGAACATGGAGTCATTTATGAGGGTCGAATTGAAGGTTTTAATGCTGGGGGTTTATTGATCCGCTTTTATTCTCTGATAGGGTTTCTTCCATTTCCCCTGTTGAGCCCTTCACATTCTTGCAAAGAACCACGACAAAGCATTCAAGAGATTGCTAAAGGATTAATTGGTTCGCTTGTTTCTGTGAAGGTAATTCAAGTAGACGAGGAGAGCAGAAAATTAGTCGTTTCAGAGAAGGAGGCTCTCTGGTCCAAGTACTCTGGGAAAGTTAACGTAGGAGATGTTTTTGAAGCAATAGTTGGTTCCGTTGAGGATTATGGTGCCTTCGTAAATATACAATTTCCCGATGGTCTTTATCATCTTACTGGGCTAGTACATATCTCAGAGGTTTCATGGGATTTAGTTCAGGATGTGAGAGACATTTTAAGCGAGGGTGACAAAGTGAGAGTCAAAGTCACTAATATTGATAGGTATTTATGTAGGGTAAAGTCAAGGATTACACTGTCGATGAGACAGTTGGAAGAAGATCCACTTTTGGAAACGTTGGATAAAGTAATACCTCAGGACGATTCATCTGATCAAGCTTCTGACCTCAACGAGGATAACAATATTGAACCTCTTCCAGGACTCAAAACAATATTTGAAGAATTATTGGAGGAAGATGGCATTGATAATGTTAAGATTACCAGACAAGGGTTCGAAAAACGTGTAGTTTCTCAAGACCTACAGCTCTGGCTTTCAAATTCGCCACCCAGTGGGCGAAAGTTTACTCTTCTTGCTCGAGCCGGGAGGCAGGTGCAGGAAATACAACTGATCACATCCCTTGATCAGGAAGGTATAAAGAAAGCCTTGCAACGAGTATTGGAACGGGTTCCATGA 1152 43.49 MSIFSPSLQSVAGIYFLPNFSSATSSLSPSVPFFVSPKFPSRRPFNFAARVSLSGSPDQAVPTEVIDGSSLSPDTLRQARRSAAWKAAKAYLEHGVIYEGRIEGFNAGGLLIRFYSLIGFLPFPLLSPSHSCKEPRQSIQEIAKGLIGSLVSVKVIQVDEESRKLVVSEKEALWSKYSGKVNVGDVFEAIVGSVEDYGAFVNIQFPDGLYHLTGLVHISEVSWDLVQDVRDILSEGDKVRVKVTNIDRYLCRVKSRITLSMRQLEEDPLLETLDKVIPQDDSSDQASDLNEDNNIEPLPGLKTIFEELLEEDGIDNVKITRQGFEKRVVSQDLQLWLSNSPPSGRKFTLLARAGRQVQEIQLITSLDQEGIKKALQRVLERVP 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14036027 14040062 - Bpe010444.1 Bpe13g00751 113531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00751 383 PANTHER OS03G0844900 PROTEIN 35 383 - -
Bpe13g00751 383 Gene3D - 179 270 IPR012340 -
Bpe13g00751 383 SUPERFAMILY Nucleic acid-binding proteins 81 173 IPR012340 -
Bpe13g00751 383 ProSiteProfiles S1 domain profile. 184 262 IPR003029 GO:0003676
Bpe13g00751 383 SUPERFAMILY Nucleic acid-binding proteins 182 275 IPR012340 -
Bpe13g00751 383 Gene3D - 85 177 IPR012340 -
Bpe13g00751 383 Pfam S1 RNA binding domain 180 248 IPR003029 GO:0003676
Bpe13g00751 383 ProSiteProfiles S1 domain profile. 95 170 IPR003029 GO:0003676
Bpe13g00751 383 SMART S1_6 182 262 IPR022967 -
Bpe13g00751 383 SMART S1_6 93 170 IPR022967 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00751 - - - cmos:111457527 486.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01507 Bpe-Chr8:15747039 Bpe13g00751 Bpe-Chr13:14036027 7.95E-19 dispersed
Bpe13g00751 Bpe-Chr13:14036027 Bpe14g00442 Bpe-Chr14:4059929 1.63E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1021 . . . . . . . . . . . Cma14g01544 . . . . Cpe03g01290 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe13g00751 . Bma06g01294 . . Cmo14g01579 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011616 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00751 Bpe_Chr13 FPKM 68.09993 72.713135 105.819878 109.718086 16.635038 17.36087 16.123167 121.303833 116.859337 123.770744