Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00758 ATGTCTGAAATGGCGAGCGCAGATCCTGAAGGAATTGATGGAGTTCGCATGACCTGGAACGCCTGGCCTCGCACCATGGTCGAGGCCAGCAAGTGCGTAATCCCTCTTGCCGCTTCAATATCGCCGATCCGTCACCATCCCGACATCCCTACGCTTCCTTATGCGCCTCTCCGATGTAGGACTTGCGCTGCAATCCTCAACCCCTTCTGTCGGGTGGATTTCACCGCTAAGATCTGGATCTGCCCTTTTTGCTACCAACGCAATCATTTTCCTCCTCACTATGCCATGATCTCCGAGACCAATCTCCCTGGCGAGCTTTATCCTCAATACACCACGGTCCAGTATGCTTTGCCTCAATCCACGAACCCTAATCTTGATCCTTCTCAGTCGAATCTCCCCCCAGTATTCATTTTCGTGCTTGATACGTGCATGATCGAAGAAGAATTCGGGTTCGTGAAATTGGCGTTGAAAATGGCGATCGAGCTGCTTCCTGATAATGCTATGGTTGGATTTGTGTCGTTTGGGACTCAGGTTCAAGTTCATGAATTGGGCTTCACTGACATGTCTAAAGTGTACGTGTTCCGAGGTACTAAGGAGATTACAAAGGAGCAGGTTTTAGAGCAACTAGGTCTTGGTGTACCTGGGCGAAGAGCGCCTGGAGCATACCAAAAGGTGGTGCAGAATGGATTTCCCGATTCAGGTGTTGCCCGCTTTTTGCTACCTGCTTCTGAGTGTGGATACACCCTCAATTCGCTATTCGATGAACTGCAAACAGATCAGTGGCCTGTTCAGCCTGGTAGTCGTGCATCTCGATGCACAGGTGTTGCATTGAGCGTTGCAGCTGGTTTGGTCGGAGCTTGTTTGCCTGGCACTGGGGCTCGAATTGTAGCTTTAGTTGGTGGTCCATGCACAGAAGGGCCTGGGACGATTGTGTCAAAAGAGCTTTCAGATCCAGTGCGTTCTCATAAAGACCTCGACAAAGATGCAGCTCCATTCTTTAAAAAAGCAGTCAAGTTTTATGAAAATTTCGCAAAACAGTTGGTTAGCCAGGGTCACGTCTTGGATCTTTTTGCATCAGCACTTGATCAGGTTGGGGTTGCAGAAATGAAAGTTGCAGTTGAGAAAACTGGTGGACTTGTTGTTCTATCTGAAAGTTTTGGCCATTCTGTATTTAAGGACTCTTTTAAGCGAGTATTTGAAGAAGGGGAGCACTCACTTGGTCTATGCTTTAATGGCACCCTTGAGATCAACTGTTCAAAGGATATCAGAGTTCAGGGGATCATTGGGCCTTGCACTTCTTTGGAAAAGAAAGGTCCCTCTGTATCTGATACTGTAGTTGGAGAGGGCAATACAACGGCGTGGAAGATGTGTGGCCTTGACAAGAGCACTTGCTTGACAGTGTTTTTTGATCTTTCATCAAGTGATAAGTCAAATACTCCAGGAACTGTAAATCCACAGTTGTACTTGCAGTTTCTTACAAGCTACCAAAACCCTGAAGGTCAACTCATGACTCGGGTCACAACTATCACTAGAAGCTGGATAGATAGTGCTATAAGCTCAGAGGAACTAGTCCAAGGATTTGACCAAGAGACTGCAGCTGTTGTTGTGGCAAGATTAACTTCATTGAAAATGGAAATGGAGGAAGAATTTGATGCTGTACGCTGGTTGGATCGATCACTGATTCGTCTATGTTCCAAATTTGGTGATTACCGGAAAGACGATCCCACCTCATTTACCTTGAACCCTTGCTTTTCATTGTTTCCTCAATTTATATTTAATCTGCGACGTTCACAATTTGTGCAGGTTTTTAACAACAGTCCAGATGAAACTGCTTATTTCCGCATGGTGTTAAACCGAGAAAATGTGACTAATGCTGCTGTGATGATTCAACCGTCACTAATATCATATTCTTTCAATTCTCTTCCTGCGCCAGCATTGTTGGATGTGGCTTCCATTGCAGCTGACCGAATTCTCATGCTCGATTCATATTTCACTGTTGTCATATTCCATGGAATGACAATAGCTCAATGGCGGAATATGGGATACCAGAATCAACCAGAACACGAGGCCTTTGCGCTTCTTTTACAAGCTCCTCAGAGTGACGCACAAATTATCATTAGGGAGCGTTTCCCTGTTCCTCGGTTGGTTGTGTGCGATCAGCATGGCTCCCAGGCTAGATTTTTACTGGCAAAGTTGAATCCTTCAGCTACATACAACAATTATCAAGAGATGGGTACAGGGTCGGACATAATTTTCACAGATGATGTTAGCCTTCAAGTTTTCTTCGAGCATCTTCAGAAACTGGCTGTGCAAAGTTGA 2319 45.58 MSEMASADPEGIDGVRMTWNAWPRTMVEASKCVIPLAASISPIRHHPDIPTLPYAPLRCRTCAAILNPFCRVDFTAKIWICPFCYQRNHFPPHYAMISETNLPGELYPQYTTVQYALPQSTNPNLDPSQSNLPPVFIFVLDTCMIEEEFGFVKLALKMAIELLPDNAMVGFVSFGTQVQVHELGFTDMSKVYVFRGTKEITKEQVLEQLGLGVPGRRAPGAYQKVVQNGFPDSGVARFLLPASECGYTLNSLFDELQTDQWPVQPGSRASRCTGVALSVAAGLVGACLPGTGARIVALVGGPCTEGPGTIVSKELSDPVRSHKDLDKDAAPFFKKAVKFYENFAKQLVSQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLSESFGHSVFKDSFKRVFEEGEHSLGLCFNGTLEINCSKDIRVQGIIGPCTSLEKKGPSVSDTVVGEGNTTAWKMCGLDKSTCLTVFFDLSSSDKSNTPGTVNPQLYLQFLTSYQNPEGQLMTRVTTITRSWIDSAISSEELVQGFDQETAAVVVARLTSLKMEMEEEFDAVRWLDRSLIRLCSKFGDYRKDDPTSFTLNPCFSLFPQFIFNLRRSQFVQVFNNSPDETAYFRMVLNRENVTNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILMLDSYFTVVIFHGMTIAQWRNMGYQNQPEHEAFALLLQAPQSDAQIIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNYQEMGTGSDIIFTDDVSLQVFFEHLQKLAVQS 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14108726 14115058 + Bpe010452.1 Bpe13g00758 113538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00758 772 Pfam Gelsolin repeat 640 728 IPR007123 -
Bpe13g00758 772 Gene3D Severin 630 734 IPR029006 -
Bpe13g00758 772 CDD Sec23_C 620 740 IPR037550 GO:0030127|GO:0090114
Bpe13g00758 772 SUPERFAMILY beta-sandwich domain of Sec23/24 8 527 - -
Bpe13g00758 772 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 771 IPR037364 -
Bpe13g00758 772 Gene3D - 53 112 - -
Bpe13g00758 772 Pfam Sec23/Sec24 beta-sandwich domain 410 513 IPR012990 -
Bpe13g00758 772 Pfam Sec23/Sec24 helical domain 528 625 IPR006900 GO:0006886|GO:0006888|GO:0030127
Bpe13g00758 772 SUPERFAMILY Helical domain of Sec23/24 528 630 IPR036175 GO:0006886|GO:0006888|GO:0030127
Bpe13g00758 772 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bpe13g00758 772 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 771 - -
Bpe13g00758 772 Gene3D Sec23/Sec24 helical domain 525 769 - -
Bpe13g00758 772 Gene3D - 10 511 - -
Bpe13g00758 772 Pfam Sec23/Sec24 trunk domain 132 399 IPR006896 GO:0006886|GO:0006888|GO:0030127
Bpe13g00758 772 SUPERFAMILY vWA-like 132 400 IPR036465 -
Bpe13g00758 772 SUPERFAMILY Zn-finger domain of Sec23/24 47 119 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bpe13g00758 772 Gene3D von Willebrand factor, type A domain 133 408 IPR036465 -
Bpe13g00758 772 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 631 771 IPR036180 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00758 K14006 SEC23; protein transport protein SEC23 - csv:101209792 1384.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00804 Bpe-Chr4:5282096 Bpe13g00758 Bpe-Chr13:14108726 0 transposed
Bpe04g00860 Bpe-Chr4:5708522 Bpe13g00758 Bpe-Chr13:14108726 0 transposed
Bpe11g01815 Bpe-Chr11:14529594 Bpe13g00758 Bpe-Chr13:14108726 2.71E-42 transposed
Bpe13g00758 Bpe-Chr13:14108726 Bpe14g01025 Bpe-Chr14:7618518 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g194 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe13g00758 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004546 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00758 Bpe_Chr13 FPKM 0.826087 1.761878 0.222698 0.0 0.219176 0.0 0.0 0.0 0.0 0.0