Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00775 ATGGCTTCTTACTGTAATTCCTTCCTCAAAGTTGTTCTTCTCCTCTTGCTTTCGCTTTCTGGTTGCTTTTGCTTCCACCGGAAACTCGCCTTCTACAACATTTCCCAGTCTCAATCCACCAGCAGCTGGTCTGCCGCTGGGGCAACGTGGTATGGAAGCGCAACTGGAGCTGGAAGCAATGTAGGAGGAGCATGTGGGTACAAAGAAGCAGTAGGGCAACCTCCATTTTCTTCACTTATAGCAGCTGGAGGGCCTTCACTGTTCAAATCTGGGCAAGGATGTGGAGCTTGTTATCAGGTGATGTGCACACAAAATTCGGCTTGCTCCGGCAATCCGGTGACAGTGGTTATCACCGATAGTTGTCCAGGCGGTGTTTGTGCCTCTGATGCCGTCCATTTTGACTTGAGTGGCACCGCTTTCGGGGCCATGGCTAAATCTGGACAAGAAGATCAACTTCGTGCGGCAGGAATCCTTCAAATTCAATACCAAAGGGTCCAGTGCAGCTATCCCGGCACACCCCTCACTTTTTCCATAGACGCAGGCTCGAATGCGTATTACTTTGCAACACTAATTGAGTATCAAGCCGGAGATGGTGATCTTTCTTTAGTAGAACTCAAGCAAGGCCAAGTATCGAACTCGTGGGTTCAAATGCAGCACTCTTGGGGTGCTGTTTGGAAATTCAATAACGGGTCGGCTTTACAGGCTCCATTTTCTCTCCGATTAACCTCGCTCTTGTCTAGTCAATCAATCGTCGCAAACAACGTCATTCCAGTTAGTTGGCAACCAGGTCAAATTTATACATGA 804 48.38 MASYCNSFLKVVLLLLLSLSGCFCFHRKLAFYNISQSQSTSSWSAAGATWYGSATGAGSNVGGACGYKEAVGQPPFSSLIAAGGPSLFKSGQGCGACYQVMCTQNSACSGNPVTVVITDSCPGGVCASDAVHFDLSGTAFGAMAKSGQEDQLRAAGILQIQYQRVQCSYPGTPLTFSIDAGSNAYYFATLIEYQAGDGDLSLVELKQGQVSNSWVQMQHSWGAVWKFNNGSALQAPFSLRLTSLLSSQSIVANNVIPVSWQPGQIYT 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14220602 14221899 - Bpe010466.1 Bpe13g00775 113555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00775 267 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Bpe13g00775 267 PRINTS Expansin/Lol pI family signature 254 267 IPR007118 GO:0005576
Bpe13g00775 267 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Bpe13g00775 267 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Bpe13g00775 267 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Bpe13g00775 267 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Bpe13g00775 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 172 IPR007112 -
Bpe13g00775 267 Gene3D - 168 267 IPR036749 -
Bpe13g00775 267 Pfam Expansin C-terminal domain 175 257 IPR007117 -
Bpe13g00775 267 PRINTS Major pollen allergen Lol pI signature 144 159 IPR005795 GO:0005576|GO:0019953
Bpe13g00775 267 PRINTS Major pollen allergen Lol pI signature 122 137 IPR005795 GO:0005576|GO:0019953
Bpe13g00775 267 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576|GO:0019953
Bpe13g00775 267 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Bpe13g00775 267 PRINTS Major pollen allergen Lol pI signature 82 93 IPR005795 GO:0005576|GO:0019953
Bpe13g00775 267 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576|GO:0019953
Bpe13g00775 267 Gene3D - 28 167 IPR036908 -
Bpe13g00775 267 SMART dpbb_1 80 162 IPR007112 -
Bpe13g00775 267 PANTHER EXPANSIN-B2-RELATED 11 266 - -
Bpe13g00775 267 SUPERFAMILY PHL pollen allergen 173 267 IPR036749 -
Bpe13g00775 267 SUPERFAMILY Barwin-like endoglucanases 34 171 IPR036908 -
Bpe13g00775 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 267 IPR007117 -
Bpe13g00775 267 Pfam Lytic transglycolase 81 162 IPR009009 -
Bpe13g00775 267 PANTHER EXPANSIN-B3 11 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00775 Bpe-Chr13:14220602 Bpe15g00684 Bpe-Chr15:17500524 4.22E-71 dispersed
Bpe13g00775 Bpe-Chr13:14220602 Bpe13g00776 Bpe-Chr13:14224068 1.19E-144 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00775 - - tcc:18614378 341.273