Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bpe13g00796	ATGGAGGGAGGTCAAAGATCTGGAATTTCAAATTATGAACTTCAAATCTCATTTGCTACTCCACCTCAAGCGATCAATGAAATGGGTTTTGTTCAGTTCGAAGAAAACCAGGTTCTGAGTTTTATGGAGCCTTCCCAAGCTTCTCAGATTTCACAAAACTTCGCGACGCCCGCCGTTACTGCCCCTTCCAAGAGCTTCAACTCCGCCGTAAATATCGCCGTGGGTGGCTTCAGTAATCGAGCTCTTGTTAGTAGACCTTCTTGGGATAACGATCAGGTCGGAAGGTTGGAAACTAAGGATGCCGGTGAGGAGAACTGCACTGGAAATACCAGCGATGGCAGCAATTCATGGTGGAGAAGCCCATCTGCAGAAAAGAGCTGCAAAGTAAAGGTGAGGAGAAAGCTTAGAGAGCCAAGATTCTGTTTCCAGACAAGAAGTGATATTGATGTTCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAAAACAGCCTTCATCCCAGCAGAAGCTACTACCGTTGTACTCATAGCAATTGTCGAGTAAAGAAGAGGGTCGAAAGATTGTCGGAGGATTGCCGGATGGTGATAACAACATACGAAGGTAGACACAATCACTCTCCTTGCGATGACTCGAATCCGTCCGAGCAAGAATGCTTTACGTCTTTTTGA	681	45.37	MEGGQRSGISNYELQISFATPPQAINEMGFVQFEENQVLSFMEPSQASQISQNFATPAVTAPSKSFNSAVNIAVGGFSNRALVSRPSWDNDQVGRLETKDAGEENCTGNTSDGSNSWWRSPSAEKSCKVKVRRKLREPRFCFQTRSDIDVLDDGYKWRKYGQKVVKNSLHPSRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNPSEQECFTSF	226

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
13	14336961	14338929	+	Bpe010486.1	Bpe13g00796	113576

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bpe13g00796	226	Pfam	WRKY DNA -binding domain	152	209	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bpe13g00796	226	SMART	WRKY_cls	151	211	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bpe13g00796	226	PANTHER	WRKY TRANSCRIPTION FACTOR 12-RELATED	16	224	-	-
	Bpe13g00796	226	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	16	224	IPR044810	GO:0003700
	Bpe13g00796	226	SUPERFAMILY	WRKY DNA-binding domain	143	210	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bpe13g00796	226	ProSiteProfiles	WRKY domain profile.	146	209	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bpe13g00796	226	Gene3D	WRKY domain	138	205	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bpe05g01061	Bpe13g00796	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bpe05g01061	Bpe-Chr5:23120538	Bpe13g00796	Bpe-Chr13:14336961	6.51E-85	dispersed
	Bpe13g00796	Bpe-Chr13:14336961	Bpe15g00386	Bpe-Chr15:15387358	5.30E-49	dispersed
	Bpe13g00796	Bpe-Chr13:14336961	Bpe02g02321	Bpe-Chr2:23847237	2.47E-35	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	22321	PF03106	WRKY	1.50E-22	CL0274	Bpe	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bpe13g00796	-		-	vvi:100254670	344.354